Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02444 ATGGATATGGTGAATAATCGCTGCCAAAACGGGGAAGAGCCACAGGTGGATGTCCTCAGTTACGCCAATGGTTCCGATGAAGGGGAAGAAGCTGCAACTTCTCCGCTTGTCCATGCTTCTTCTGCTTTGCACACCAGAACCAGTGAACTTACCATTTCCTTTGAGGGCGAGGTCTATGTTTTCCCTGCTGTTACTCCACAAAAGGTGCAGGCTGTATTATTACTGTTGGGAGGGCAGGAGATGCCAAATACCGTCCCCACCTCAAACTTTTTGTTGCAGCAAAACAGTCAGGACATTAGGGAAACTAATGATCCTTCCCGATGTTCAAAGCTTTCCCGAAGAATTGCATCGCTCGTAAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGGTACTCATGCCGTAAAGAGGTAGCCCAGAGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAGGATTACAAATCTCATGCTGAAAATTGGGATTCAAGCAATGGTACTCCTGACCCAGAATATAATGAACGTAGATGCCAACATTGTGGAATCAGTGAGAAGTCTACTCCAGCTATGCGTCGGGGACCAGCAGGTCCAAGATCACTATGCAATGCCTGTGGACTTATGTGGGCTAATAAGGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGAAGGACAAAGAGGGGAGCCCTGAGGAAACAAAGCCTGTGCAAATGGATTCCAGACGGTCACCCGAGAAAACAAATGAGCAGTTTATCATCGGAACTGCTGAATCAGTTACTGACAACTTGCCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCTGGGACCGAGTTTGAGATTCCCGCGGGTTTTGATGAACAGGTTGACATCGATGATTCCAACATGAGGACATATTGGCTGTGA 1038 0.4586 MDMVNNRCQNGEEPQVDVLSYANGSDEGEEAATSPLVHASSALHTRTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQEMPNTVPTSNFLLQQNSQDIRETNDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSHAENWDSSNGTPDPEYNERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNELDTSADIKPSKAEAEHSCAKKDKEGSPEETKPVQMDSRRSPEKTNEQFIIGTAESVTDNLPIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02444 345 SMART GATA_3 177 230 IPR000679 GO:0006355|GO:0043565
Phco4g02444 345 ProSiteProfiles GATA-type zinc finger domain profile. 177 234 IPR000679 GO:0006355|GO:0043565
Phco4g02444 345 PANTHER GATA TRANSCRIPTION FACTOR 28 32 324 IPR045280 GO:0006355
Phco4g02444 345 Pfam tify domain 47 77 IPR010399 -
Phco4g02444 345 SMART tify_2 43 78 IPR010399 -
Phco4g02444 345 MobiDBLite consensus disorder prediction 240 280 - -
Phco4g02444 345 Pfam CCT motif 114 155 IPR010402 GO:0005515
Phco4g02444 345 MobiDBLite consensus disorder prediction 240 278 - -
Phco4g02444 345 ProSitePatterns GATA-type zinc finger domain. 183 210 IPR000679 GO:0006355|GO:0043565
Phco4g02444 345 CDD ZnF_GATA 182 225 IPR000679 GO:0006355|GO:0043565
Phco4g02444 345 Gene3D - 175 235 IPR013088 GO:0006355|GO:0008270
Phco4g02444 345 Pfam GATA zinc finger 183 219 IPR000679 GO:0006355|GO:0043565
Phco4g02444 345 ProSiteProfiles Tify domain profile. 43 78 IPR010399 -
Phco4g02444 345 ProSiteProfiles CCT domain profile. 114 156 IPR010402 GO:0005515
Phco4g02444 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02444 Phco-Chr4 45595898 45602643 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco4g02444 CCT 4.1e-14 CL0281