Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02432 ATGTCCTCCCTTTGCCTATTGATGCAACACGCACACAAGTTCTGCTTTCAACTTTTTCCTCTTCCAACTGCTTTATCTTCAAGGGAGATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCCAGGCAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTATCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTTTTTGATTACGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGCTCGATCGCCATTCAGCAATGCATAGATCGGATCGTACCTATATGGAGCTGCAGATTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAGAGTCATGAACTGAGGCAGTTGAATGGGGAAGATCTGCAAGGATTGACACTACAAGAACTGCAGAAAATAGAGGAACATCTTAAAAGGGGTTTGAGCAATGTTTCAAAACTAAAGGATGAAAAAGCTATGCAAGAGATCAGCGCCCTTAAAAGAAAGGGAGTGGAACTAATGGAGGAAAACCAAAGATTGAAACAGGTACCGAGCCTTATCCCCTTACATAGGCAATCATCGGAATCCATTATTAGCAATTCATCAAATCTTCCTGAAGATGGTGGAAGTGACACATCTCTCAAGTTGGGGTTACCTTAA 702 0.4202 MSSLCLLMQHAHKFCFQLFPLPTALSSREMTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYASSSMQQVIERLDRHSAMHRSDRTYMELQIESDSNDILRKKVEDKSHELRQLNGEDLQGLTLQELQKIEEHLKRGLSNVSKLKDEKAMQEISALKRKGVELMEENQRLKQVPSLIPLHRQSSESIISNSSNLPEDGGSDTSLKLGLP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02432 233 MobiDBLite consensus disorder prediction 208 223 - -
Phco4g02432 233 Coils Coil 121 141 - -
Phco4g02432 233 CDD MADS_MEF2_like 32 107 IPR033896 GO:0000977|GO:0045944
Phco4g02432 233 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Phco4g02432 233 Gene3D - 43 122 IPR036879 GO:0003677|GO:0046983
Phco4g02432 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 192 - -
Phco4g02432 233 MobiDBLite consensus disorder prediction 208 233 - -
Phco4g02432 233 ProSitePatterns MADS-box domain signature. 32 86 IPR002100 GO:0003677|GO:0046983
Phco4g02432 233 ProSiteProfiles MADS-box domain profile. 30 90 IPR002100 GO:0003677|GO:0046983
Phco4g02432 233 FunFam Transcription factor, MADS-box 42 110 - -
Phco4g02432 233 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Phco4g02432 233 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Phco4g02432 233 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Phco4g02432 233 Coils Coil 151 171 - -
Phco4g02432 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 86 IPR002100 GO:0003677|GO:0046983
Phco4g02432 233 Pfam K-box region 122 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g02432 233 Coils Coil 177 197 - -
Phco4g02432 233 ProSiteProfiles K-box domain profile. 114 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g02432 233 SUPERFAMILY SRF-like 31 116 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02432 Phco-Chr4 45513540 45525798 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco4g02432 K-box 1.4e-13 No_clan