Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02394 ATGGCGGAGCCTGCTTCTTACGGTTTGGGACCTCGATTAGATCTTCAGCAATTACAACTTGAAGCCCAGAATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTTGCAATTATCGGATGTTTCAAATCACACCAGAACCACCTAACAGGCCACCAAGTGGCTCCCTTTTTCTATTTGATCGAAAGGTTTTAAGGTACTTTAGAAAAGATGGACATATTTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAGTTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAAACCAATGTTGGTGGAAAAACATATTCTGGTGAGGCTACATCTGATTCCCATAATGGAAGTTCTTTGTCATCTGGCTTTCCCAGAAATTATGGTAGTGTGCCTTCCGGAAGTACAGATTCCATGAGCCCAACCAGCACTTTGACGTCTTTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCAAGTTCAGGATTACAATCCTATCATGAATCCAAAAGTTTGGGGCCGATGGATAAGATTGATGCTCGTTCAAGTAGTTCATATCTTATGCATCCATTTTCAGGTGATCCTGCACAGTTTCCAGTTCCTGGAGCAGAATATATCCCATTTGTTCAGGGTCATAAGTCTAGAGCTAGTGATACTGCTTACACTGAGGGTCATAGAGCACATGACATTGCATCATGGAACAATGCCATGGAGCAGTCTTCAGGAAACCATACTCCTCCTTCTCTTGTATCATCTACATCCATTCCATCAAGTGCATTGGGAAACATCCTTGAAGAAAACAATACTGTTCTAGGCAACCTTTTAGGGCGTAAAAATGCCCTCACTGAAGAGGAAAGGGCCTCACAGCCTATCCACTCAAATTGGCTGATTCCTTTTGAAGACGATACAATAGAATTACCTAAGTGGAGCCTTACCCAATCATTGGGCTTGGAATTTGGATCTGATTATGGCACTAGTTTACTGGGAGATGTAACTGATAATGCAGGCCCAGAAATTGTTGCTGAGATGTTCACCTTTAATGGTGAGTTAAAAGAGAAGTCTGTGCACCAAAACATCTCAAAGCAGTATACAAATACACAATCTCAACCTGCAACGAAATCCAATTCTGAGTATGAAGTGCCTGGTGAAGCCAGTATCAATTATGCCTTGACCATGAAGCGTGGATTATTGGATGGAGAGGAGAGCTTAAAGAAGGTTGATAGTTTCTCTAGGTGGATTACTAAAGAATTTGCAGGTGTGGATGATCTGCATATGCAGTCCTCCCCTGGCATTTCATGGAGCACAGATGATTGTGGAGATGTGATAGATGATACATCATTAAACCTGTCCCTTTCTCAAGATCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTCTTGATTGTTGGAACATTTTTGAAGAGTCAACCTATGGTGACAGCATGTAATTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTTTAGGAAACGGAATTCTATGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACACGTGCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTCGAGTACAGAGAAGGTGTCGACAGAAATGTTGATTTTGCAGATTTTTTTAACAGTTCAACTGAAGTGGTCCTTCATTTGCGACTGGTGGGGTTACTTTCTTTAAATTCAGCACACACTTCAAATCAAGTGCTTGAGGATGATATGGAGAAAAGAAACTTAATTTTCAAGCTTATTTCACTGAAAGAGGAAGAAGAATATTCATGTAGAGAAGAGACAACTGTGGAGATGGATACAACAAAACACAAGTTGAAGGAGCATATGTTTCACAAGCAGGTTAAAGAGAGCTTGTACTCATGGCTGCTTCGCAAAGTAACTGAAACTGGTAAAGGGCCTCTTGTATTAAGTGAGGAAGGGCAGGGTGTGTTACATTTAGTTGCTGCTCTTGGTTACGATTGGGCCATAAAACCAATCATAACTGCTGGAGTCAATATCAACTTCCGTGATGTGAGTGGATGGACAGCTTTACATTGGGCTGCATACTGTGGCCGGGAGCGAACAGTTGCAGTCCTTGTGTCCATGGGAGCAGACACTAAAGCAGTGACAGATCCATGTTCAGAAGTTCCTGAAGGTAGATCACCTGCAGATCTTGCTTCTAGCAATGGCCACAAAGGACTTTCCGGTTTTCTTGCTGAGTCATTATTAACTAGCCATCTTGAATTACTCACAATGGAGGAAAATAAAGATGGTAGGAAAGAAACTTCAGGAATGAAAGCAGTGCAAACAGTTTCAGAGCGAACTGCTTTACCTGTGCTTTATGGTGATTTACCAGATGTTATCTGCCTTAAGGATTCCCTCAATGCTGTCCGGAATGCTACACAAGCTGCTGATCGAATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAACAGTTAGCTCAGCATGATGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCCCTTTTAGCTTCTAGGACGAAGAAATCTGGACAAGGAGAGGGTTTAGCCAGTGCTGCTGCAATACAAATACAGAAAAAGTTTCGGGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTGAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAAACCAATCATATGGTCCGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGGCGCAAGGGTAGTGGTTTACGTGGATTTCGATCAGATACCGTGAACAAGGTCGTCCCTGACCAACCAAGCGAATCTCCGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAGAGTGAAGCAAGGTTCCGAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGATAATTTGAATTCGATGAATTCTGAAGAGGCTGTTGACAGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTACCTATAGCTTTCGATTGA 3261 0.4201 MAEPASYGLGPRLDLQQLQLEAQNRWLRPAEICEILCNYRMFQITPEPPNRPPSGSLFLFDRKVLRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENESFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNVGGKTYSGEATSDSHNGSSLSSGFPRNYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLQSYHESKSLGPMDKIDARSSSSYLMHPFSGDPAQFPVPGAEYIPFVQGHKSRASDTAYTEGHRAHDIASWNNAMEQSSGNHTPPSLVSSTSIPSSALGNILEENNTVLGNLLGRKNALTEEERASQPIHSNWLIPFEDDTIELPKWSLTQSLGLEFGSDYGTSLLGDVTDNAGPEIVAEMFTFNGELKEKSVHQNISKQYTNTQSQPATKSNSEYEVPGEASINYALTMKRGLLDGEESLKKVDSFSRWITKEFAGVDDLHMQSSPGISWSTDDCGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPMVTACNWSCMFGEVEVPAEVLGNGILCCQAPPHKIGRVPFYVTRANRFACSEVREFEYREGVDRNVDFADFFNSSTEVVLHLRLVGLLSLNSAHTSNQVLEDDMEKRNLIFKLISLKEEEEYSCREETTVEMDTTKHKLKEHMFHKQVKESLYSWLLRKVTETGKGPLVLSEEGQGVLHLVAALGYDWAIKPIITAGVNINFRDVSGWTALHWAAYCGRERTVAVLVSMGADTKAVTDPCSEVPEGRSPADLASSNGHKGLSGFLAESLLTSHLELLTMEENKDGRKETSGMKAVQTVSERTALPVLYGDLPDVICLKDSLNAVRNATQAADRIHQVYRMQSFQRKQLAQHDDDEFGLSDQQALSLLASRTKKSGQGEGLASAAAIQIQKKFRGWKKRKEFLIIRERIVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRSDTVNKVVPDQPSESPKEDDYDFLKEGRKQSEARFRKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGDNLNSMNSEEAVDSVEDLIDIDMLLDDENFLPIAFD 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02394 1086 SMART iq_5 908 930 IPR000048 GO:0005515
Phco4g02394 1086 SMART iq_5 931 953 IPR000048 GO:0005515
Phco4g02394 1086 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Phco4g02394 1086 SMART ANK_2a 773 802 IPR002110 GO:0005515
Phco4g02394 1086 SMART ANK_2a 734 763 IPR002110 GO:0005515
Phco4g02394 1086 SMART ANK_2a 701 730 IPR002110 GO:0005515
Phco4g02394 1086 FunFam Calmodulin-binding transcription activator 2 908 956 - -
Phco4g02394 1086 CDD IPT 500 588 - -
Phco4g02394 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 959 IPR027417 -
Phco4g02394 1086 ProSiteProfiles IQ motif profile. 909 938 IPR000048 GO:0005515
Phco4g02394 1086 ProSiteProfiles Ankyrin repeat region circular profile. 734 760 - -
Phco4g02394 1086 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Phco4g02394 1086 MobiDBLite consensus disorder prediction 201 220 - -
Phco4g02394 1086 Pfam IQ calmodulin-binding motif 911 929 IPR000048 GO:0005515
Phco4g02394 1086 Pfam IQ calmodulin-binding motif 934 953 IPR000048 GO:0005515
Phco4g02394 1086 Gene3D - 664 796 IPR036770 -
Phco4g02394 1086 ProSiteProfiles Ankyrin repeat profile. 734 766 IPR002110 GO:0005515
Phco4g02394 1086 Gene3D Immunoglobulins 494 590 IPR013783 -
Phco4g02394 1086 SUPERFAMILY Ankyrin repeat 692 795 IPR036770 -
Phco4g02394 1086 Gene3D - 909 955 - -
Phco4g02394 1086 Pfam Ankyrin repeat 735 765 IPR002110 GO:0005515
Phco4g02394 1086 FunFam Calmodulin-binding transcription activator 2 494 590 - -
Phco4g02394 1086 MobiDBLite consensus disorder prediction 147 187 - -
Phco4g02394 1086 Pfam IPT/TIG domain 501 586 IPR002909 -
Phco4g02394 1086 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1048 - -
Phco4g02394 1086 SUPERFAMILY E set domains 501 587 IPR014756 -
Phco4g02394 1086 ProSiteProfiles IQ motif profile. 932 956 IPR000048 GO:0005515
Phco4g02394 1086 SMART CG_1_2 18 136 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02394 Phco-Chr4 45091048 45101678 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phco4g02394 CG-1 2.2e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02394 4 45091048 45101678 Phco11g00182 11 1184594 1197144 PCT