Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02371 ATGAAGCAAGTGATTTCATCTTTCAGGTGTTTGTTTCTTCTTTGTGCAGTTTTGGTGCTTGACTTCGTGGTCAAGGTTTCTGGCAACCAGGAAGGTGATGCCCTGGATGCATTTAAGGGCAATATGAATGATCCTAACAATGTTCTTCAAAGTTGGGATTCTACCCTTGTAAATCCTTGCACATGGTTTCATGTTACTTGCGATAATGACAATAGGGTGATCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTGAGCTCGTTGCACAGCTTGGTCAACTCCCAAAGTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATCCCAATTGAGCTAGGGAGTTTGACAAACTTGGTGAGCTTGGATCTTTACTCGAACAACATTACTGGTCCCATTCCAGACGAATTGGCCAACCTTAAAAAACTACGTTTCCTGCGTCTCAACAATAACACCTTGTCAGGAACAATTCCTATGCGTCTGACCAATGTGGATATGCAAGTGCTTGATTTATCGAACAACAATTTAACAGGAGATGTCCCAACCACTGGTTCTTTTTCATATTTTACTCCCATCAGTTTTAGGAATAATCCCCTATTGAATTATACTAGCATTGAATCTCCATCAGCTTCAGCACCGCCACGAAGTCCTCCAGGTAAAAATAACCGTGCTGTTGGAATCACTGCTGGAGGAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCTCCTGTAATTGCACTTGTTTATTGTAAGAGAAGGAAACCACAGGATTTTTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCACTGCGCGAACTGCAAGTTGCAACAGATACCTTTAACAACAAAAACGTTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGATATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGAACCCAGGGTGGGGAGATGCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGCATGGTTTTTGTATGACACCTACTGAACGTTTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTTGCTTCATGCTTACGAGATCGTCCGGAAGCACAGCCACCACTTGAATGGTCAAAGCGGAAGAGTATTGCTCTAGGAGCTGCTAGGGGGCTTGCTTATCTGCATGATCATTGTGATCCAAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTATTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTAATGGATTACAAAGATACTCATGTTACTACTGCGGTACGAGGTACTATTGGCCATATAGCACCTGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTGAAAGCACTTTTGAAAGACAAGAGGTTGGAGACGCTGGTGGATGCAGATTTGGAGGGAAATTATGAGGAGGAGGAAGCAGAAGAATTAATCCAAGTGGCCTTGTTATGCACACAAAGCTCCCCTTTGGAAAGACCAAAGATGTCTGAGGTAGTGAGAATGCTAGAGGGAGAAGGTTTGGCAGAAAAATGGGATAAATGGTGGCAAAAAGAGGATAGTATCCAACAAAAGTTTGACCCCTCCAGTCTCCACCATGCTTACTGGCCATTAGACTCAACATCAAATATTCCCCCAGATGAACTGTCAGGGCCTAGATGA 1851 0.4246 MKQVISSFRCLFLLCAVLVLDFVVKVSGNQEGDALDAFKGNMNDPNNVLQSWDSTLVNPCTWFHVTCDNDNRVIRVDLGNANLSGELVAQLGQLPKLQYLELYSNNITGKIPIELGSLTNLVSLDLYSNNITGPIPDELANLKKLRFLRLNNNTLSGTIPMRLTNVDMQVLDLSNNNLTGDVPTTGSFSYFTPISFRNNPLLNYTSIESPSASAPPRSPPGKNNRAVGITAGGVAVGAALLFAAPVIALVYCKRRKPQDFFFDVAAEEDPEVHLGQLKRFSLRELQVATDTFNNKNVLGRGGFGKVYKGRLTNGYLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMANGSVASCLRDRPEAQPPLEWSKRKSIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKALLKDKRLETLVDADLEGNYEEEEAEELIQVALLCTQSSPLERPKMSEVVRMLEGEGLAEKWDKWWQKEDSIQQKFDPSSLHHAYWPLDSTSNIPPDELSGPR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02371 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 576 - -
Phco4g02371 616 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Phco4g02371 616 SUPERFAMILY Protein kinase-like (PK-like) 272 567 IPR011009 -
Phco4g02371 616 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Phco4g02371 616 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Phco4g02371 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Phco4g02371 616 ProSiteProfiles Protein kinase domain profile. 292 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02371 616 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02371 616 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Phco4g02371 616 FunFam Somatic embryogenesis receptor-like kinase 1 369 587 - -
Phco4g02371 616 Pfam Protein kinase domain 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02371 616 Gene3D Ribonuclease Inhibitor 27 210 IPR032675 -
Phco4g02371 616 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Phco4g02371 616 SUPERFAMILY L domain-like 30 202 - -
Phco4g02371 616 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
Phco4g02371 616 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02371 Phco-Chr4 44826240 44831353 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco4g02371 Pkinase 7.9e-46 CL0016