Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02370 ATGGGCAACAAGAAGCGAGTGATTACATCTTTCATGCGTTTGTATGTTATTTTTTGGACATTTTTGGTGCTTCACTTGCTGCTCAAGGTTTCTGGCAATCCAGAAGGTGATGCCCTGACTACATTCAAGAAGAATATGATAGATCCTACTGATGCTCTTCATAGTTGGGATCCTCACATTATAACTCCTTGTACATGGTTTCATGTTACTTGCAACGATGAAAGTAGCGTCATCCGTTTGGATCTTGGAAATGCAAACCTTTCGGGTCAACTTGGTCCAGAGCTTGGTCAGCTCCCAAATTTGGAATATTTGGAACTTTATAACAATAATATAACTGGGGAAATCCCAAATGTGCTTGGAAATTTGACGAACTTGCAGACTTTGGATCTTTACTCGAACAACATTACTGGTCAAATTCCAGAAGAATTAGCCAAACTTAAAAAACTGCGAAACCTGCGTCTCAACAAAAACAGCTTGTCAGGAAAGATTCCTGTGGGTTTGACCACAATTGATACACTGCAAGTTCTTGACTTATCGTACAACAACTTAACAGGGAATGTCCCAATCAATGGTTCGTTTTCAAGTTTGACTCCCATCAGTTTTGACAGTAATCCTTTCTTGAAGCAAACCACTCCAACTTCACCACGCGTTATACAGAAACAAAATCCTTCAGGTAATTTCATATCTATTGGAGTCATTGCTGGAGGAGTTGCCGTGGGTGCTGCACTGTTGTTTGCAGCTCCAGTAATTACATTTGTTTACTGGAAAAGAAGGAAGCCACCAGATTATTTCTTTGATGTTGCAGCTGACGAGGACCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCGCTGCATGAACTGCGAGTTGCAACAGATGGCTTTAATAGCAAAAACAATATTGGCAGTGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTTGTAGCAGTAAAAAGACTTAACCAAGAACGCATCCGGGGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATTATCAGCATGGCTGTGCATCGAAATTTGCTTCGGCTGATTGGTTTTTGTATGACAACTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGAGTCATGTTTACGAGAGCGATCAGAATCACAAGCACCACTTCAATGGCCAGTTCGGAAGCGTATTGCTCTAGGAGCAGCTAAGGGGCTTGCTTATTTGCATGATCATTGTAACCCAAAGATTATTCATCGTGATATCAAAGCTGCTAATATATTATTGGATAAGGACTTTGAAGCAGTTGTAGGAGATTTTGGTTTAGCAAAGCTAATCGATTACAAAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGCCATATAGCACCAGAGTATCTCTCTACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTAATGCTTCTTGAGATAATAACTGGACAGAGGGCTTTTAATTTAGCACGACTTGCCATTAGCGATGAGGTCATGTTGCTTGAATGGGTGAAATCACTTCTAAAAGAGAGGAAGTTGAAGACACTGGTGGATGCAGATTTACATGGAGATTATGACGAAGAGGAACTAGAGGAGTTAATCCAAATGGCCTTGCTATGCACACAAAGCTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGAAGAAAAGTGGGATAAATGGTGGAATAAAGAGGATATGATCCAAAAAGATTACAACCCCTTCAATCTCTACAATAATTATGACTCAACTTCAAATATTGCACCAGATGAATTGTCTGGTCCTAGATGA 1851 0.4025 MGNKKRVITSFMRLYVIFWTFLVLHLLLKVSGNPEGDALTTFKKNMIDPTDALHSWDPHIITPCTWFHVTCNDESSVIRLDLGNANLSGQLGPELGQLPNLEYLELYNNNITGEIPNVLGNLTNLQTLDLYSNNITGQIPEELAKLKKLRNLRLNKNSLSGKIPVGLTTIDTLQVLDLSYNNLTGNVPINGSFSSLTPISFDSNPFLKQTTPTSPRVIQKQNPSGNFISIGVIAGGVAVGAALLFAAPVITFVYWKRRKPPDYFFDVAADEDPEVNFGQLKRFSLHELRVATDGFNSKNNIGSGGFGKVYKGRLTNGDLVAVKRLNQERIRGEEKQFQTEVEIISMAVHRNLLRLIGFCMTTTERLLVYPFMVNGSVESCLRERSESQAPLQWPVRKRIALGAAKGLAYLHDHCNPKIIHRDIKAANILLDKDFEAVVGDFGLAKLIDYKNTHVTTAVRGTLGHIAPEYLSTGKSSEKTDVFGYGVMLLEIITGQRAFNLARLAISDEVMLLEWVKSLLKERKLKTLVDADLHGDYDEEELEELIQMALLCTQSSPLDRPKMSEVVRMLEGEGLEEKWDKWWNKEDMIQKDYNPFNLYNNYDSTSNIAPDELSGPR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02370 616 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Phco4g02370 616 Pfam Protein kinase domain 296 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02370 616 ProSiteProfiles Leucine-rich repeat profile. 100 123 IPR001611 GO:0005515
Phco4g02370 616 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Phco4g02370 616 ProSiteProfiles Leucine-rich repeat profile. 124 147 IPR001611 GO:0005515
Phco4g02370 616 SMART serkin_6 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02370 616 FunFam Somatic embryogenesis receptor-like kinase 1 372 589 - -
Phco4g02370 616 ProSiteProfiles Protein kinase domain profile. 295 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02370 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Phco4g02370 616 SUPERFAMILY Protein kinase-like (PK-like) 275 570 IPR011009 -
Phco4g02370 616 SUPERFAMILY L domain-like 35 206 - -
Phco4g02370 616 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Phco4g02370 616 Gene3D Transferase(Phosphotransferase) domain 1 372 589 - -
Phco4g02370 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 579 - -
Phco4g02370 616 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Phco4g02370 616 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Phco4g02370 616 FunFam Somatic embryogenesis receptor kinase 1 264 371 - -
Phco4g02370 616 FunFam Somatic embryogenesis receptor kinase 1 31 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02370 Phco-Chr4 44815441 44820630 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco4g02370 Pkinase 3.2e-47 CL0016