Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02322 ATGGGTAGAGTCCAAAACCCCACCAAGATGGAAATTGATCTCTCTTTGAAGATTGATACTGATGATGAACAAAAAGCACAAGTAGATGAGCAACTCAAAGAGTATAACGAGGAAGAAATGGCACAGATTCCGGATAATAACAAGGAAGAAGTCCCTGAAACTACAGCTGGTGAAATAGAAGATGATGCATCAGTGGTAGAAACATCTTTGCAAGATAACACAAAAACCAAAGAGTTAAGTGTCCTGCAAATGGAGATGGAAAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTTGTAGAACAAACAATGAAAGACTATTATGATCTGCAAATGAAATTCTCAGCTATCCAGGAAAACAATAAAAGAAAGGATCATGAAATTTCTCTCTCACTTCAAGACATTGCGACCAGCAGCGGTGAAGGACCATCGAGAATTCTTGAGATCGTTAATAAAAAAATTAAAAGTGCTCCATCTCCTCCTAATACTGATGATGATCGTTTAAGCGAGAGTGAATTGGGTTTATCACTGAGGTTGCAACCAAGCACAAGTCAAAAGGAAAGTGATGTGGGAAACAAGGAAGAGAGAAAAGATCAACAATTGGCAAGTTTTGTATCAGTGCAGAACAAACTACAGCGGACACAAGAGTTGCCTGGTATTACTACCCATGCTATCACCCCTCCAAACAGAAAGGCTAGGGTTTCTGTTAGAGCAAGATGTGAAGCTGCCACAATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAGGGAAATCCATGTCCACGAGCCTATTATCGTTGCACTGTAGCCCCAGGTTGCCCCGTTAGGAAACAGGTACAAAGATGTATAGATGACATGTCCATTCTTATTACAACCTATGAAGGGACACATAATCATCCACTCCCTGTGGGTGCAACTGCCATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGATTCAAGCAACCCTATTTCAGATGGCACCTCTAGTTTCACTCAAGCACCCCTTCCTTACACCTTCCACTCATTAAACCCAGCTTCAAATTTCAGGAGCATGAACTCCAGTGATCCACCCAAAGGGGTTGTTCTTGATCTCACAAGCAACCTCAGTGAACCACTACGTTTTTCTACTGGTAGCTCCTCCAATACCACAACTGAGAGCTGCTTTTCTTGGATGCCAAACAAATACCAAGGTGGTGGTGCAATTACAATGAACAACAATTTTCACAAGCCTAGACCAGTGGACATTCATGATAGAATTTGGAAAGGAGAAGAAAGCAAGCCACTAGATGACAATGTGTCCGCCATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCTGCAGCCATAACATCTCTCATGAATAAAGAGAGCCACACTGCTACTCATCCTATTGGGACTTCCTTTGGTCCTAGGAGTGGCCAAAATGGTACCTAG 1458 0.4239 MGRVQNPTKMEIDLSLKIDTDDEQKAQVDEQLKEYNEEEMAQIPDNNKEEVPETTAGEIEDDASVVETSLQDNTKTKELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQDIATSSGEGPSRILEIVNKKIKSAPSPPNTDDDRLSESELGLSLRLQPSTSQKESDVGNKEERKDQQLASFVSVQNKLQRTQELPGITTHAITPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSSFTQAPLPYTFHSLNPASNFRSMNSSDPPKGVVLDLTSNLSEPLRFSTGSSSNTTTESCFSWMPNKYQGGGAITMNNNFHKPRPVDIHDRIWKGEESKPLDDNVSAIASDPKFRVAVAAAITSLMNKESHTATHPIGTSFGPRSGQNGT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02322 485 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g02322 485 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 57 464 IPR044810 GO:0003700
Phco4g02322 485 SUPERFAMILY WRKY DNA-binding domain 238 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g02322 485 MobiDBLite consensus disorder prediction 153 198 - -
Phco4g02322 485 Pfam WRKY DNA -binding domain 246 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g02322 485 MobiDBLite consensus disorder prediction 464 485 - -
Phco4g02322 485 MobiDBLite consensus disorder prediction 38 59 - -
Phco4g02322 485 MobiDBLite consensus disorder prediction 38 54 - -
Phco4g02322 485 Coils Coil 79 106 - -
Phco4g02322 485 Gene3D WRKY domain 230 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g02322 485 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g02322 485 MobiDBLite consensus disorder prediction 1 23 - -
Phco4g02322 485 FunFam probable WRKY transcription factor 31 230 307 - -
Phco4g02322 485 Coils Coil 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02322 Phco-Chr4 44283305 44285700 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco4g02322 WRKY 1.6e-24 CL0274