Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02270 ATGGCCAATGCCAAACTGCTTTCTGCTAAACGCTATAAAAGGACAAAAGCAGACGACTCTACAACAATAGCTTTGCCAATATTCAACCCAGGCTTCACTCACTTCCATTTTAGTATCAGCAAACTGCAATCGAATTTTCTACAATATTCCACAGTGATGCTGTCCCTAAAGATTAGTTTGACTACAGTCGTTGTCCTTTCCATTGTATCCATAGTTTCCCATGCTGAAGCAAGCTTGGATGTTGAAATTGAAGCCTTGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAGTGGGGCTCTAGCAGACTGGGTAGACACTCACAACCACTGCAACTGGTCTGGCATTGCATGTGACCCATCTTCAAATCAAGTCATTTCTATTTCTCTGGTTAGTCTTCAACTCCAAGGGAAGATTTCACCTTTCCTTGGGAACATTTCAGGCCTTCAGGTTTTTGATATAACTTCAAACTCATTCACTGGCTACATTCCTGCTCAGCTCGGTCTTAATACTCAACTTACAAAACTCATTCTTTATAACAATTCTCTCTCAGGTCCTATCCCTCCACAATTAGGTAGCCTTAAAAGCCTGCAGTATTTGGATTTAGGTAACAACTTCTTGAATGGAAGCCTCCCTGACAGCATTTTCAACTGCACTTCTTTGTTGGGTATTGCTTTTAATTTCAACAACCTTACTGGCAAAATTCCATCAAACATAGGGAATCTAGTGAACCTTGTACAGATTATAGGTTATGGAAATAATTTAGTAGGATCTATACCTCTTTCCGTAGGTCAGTTAGGAGCTTTGCGAGCTCTTGATTTTAGCGAAAACAAGTTATCAGGTGTAATACCTAGAGAGATTGGAAACCTGACAAAATTAGAATACCTTGAATTGTTCCAAAATTCCTTGAGTGGGAAAATTCCGTTTGAGCTTGGTAAGTGTAGCAATCTTTCAAGCCTTGAGTTATCCGACAATCAGCTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTCAGTTGAAGAAATTGAAGTTACACAAGAATAACTTGAATTCCACCATCCCTTCAGCCATATTCCAGTTGAAATCATTAACAAATCTAGGCCTCTCACAGAATAACTTAGAGGGAACAATATCTTCTGAGATTGGAAATATGAACTCCTTGCAAGTTCTAACCCTGCATTTAAATAAGTTAACTGGGGAGATCCCTTCATCAATAACAAACTTGACAAACTTGACATACCTGTCAATGAGCCAGAATCTCCTCTCAGGTGAACTTCCTTCAAACTTGGGTGTGCTTCATAATTTGCAGTTTCTTGTTTTGAACGCCAACCACTTTCATGGATCCATTCCCCCTAGCATTACTAATTGTACTGCACTGGTAAATGTAAGTTTGTCTTTTAATGCTTTAAGTGGGAAAATTCCTCAGGGTTTTTCCAGGTCACCAAATCTTACTTTCCTGTCTCTTGCGTCCAACAAAATGACTGGGGAAATCCCAGATGACCTCTACAACTGCTCAAATCTTAGCACTCTCAGTTTGGCAATAAATAACTTCAGTGGATTGATAAAATCAGATATTCAAAACCTGACTAAACTTCAACGCCTACAGTTGAATGTAAATTCTTTCACAGGACCAATTCCACCAGAGATTGGAAACTTGAATCAACTCATTACTCTATCCCTCTCTGAAAATAAGTTTTCAGGTCAAATTCCTACAGAACTGTCCAAACTTTCTCGCCTTCAGGGGCTCACACTTCATGCCAATGTATTAGAAGGTAAAATACCTGATAAGCTCTCCGAATTAAAAGGACTAACCGAACTTTTCCTGCATCAAAACAACTTGGTTGGTCAAATACCTGATACTCTCTCAAAGCTTGAGATGCTTTCCTACTTAGACCTTCATGGCAACAAACTTAATGGGTCCATTCCTAGAAGCATGGGGAAGCTAAATCAACTTTTAGTTTTGGATCTCTCTCACAACCAGCTCATAGGATCAATTCCTGGGGATGTCATTGCAAACTTAAAAAGCATGCAGATGTATCTCAACCTTTCTTACAACCACTTGGTCGGAAATATTTCAACCGAGTTGGGCATGTTGGAAGTGATACAGGCTATTGACATTTCAAACAATAATCTTTCGGGTTCCATTCCCAGAACACTTTCTGGGTGCAGAAACCTGTTTAATCTTGATTTTTCAGGAAACAGTATCTCAGGTCCTATTCCCGCAGAAGCGTTTAGTCACATGGACTTGCTTGAAAGCTTAAACCTCTCAAGGAACCATTTAGATGGTGAAATCCCTGAAGTACTGGCAGAACTTGATCATCTTAGTTCCGTAGATCTTTCTCAGAATGACTTGAAGGGAATTATTCCTGAGGGCTTCGCCAACCTTTCTAACTTGGTGCATCTCAACCTTTCCTTCAATCAACTAGAAGGTCCTGTTCCTAAGACAGGAGTATTTGCACACATCAATGCATCTAGTGTGATGGGAAACCAGGATCTTTGTGGAGCTAAGTTCCTACCGCCATGCAGGAAGACAAAACATTCACTTTCCAAGAAGGGCATATCTATTATTGCTTCACTTGGATCTCTAGCTATACTTCTAGTGTTAGTGATTCTAATTCTCAGTCGTGGCACCAAACTCTGTAATTCTAAAGAGAGAGATATCAGTGTAAATCATGAACCAGACTACAATTCAGCATTGGCACTTAAAAGGTTCAGTCCAAAGGAATTGGAAAATGCCACTAGATTTTTCAGTGCGGACAGCATCATTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAAATGGAAGATGGCCAGGTTGTTGCCATAAAAAGGTTGAATTTGCTACAATTCTCTGCCAATACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGTTGAGACACAGGAATTTGATCAAGATAATTGGATATGCCTGGCAGAGTGGGAAAATGAAGGCTTTGGTTCTGGAGTACATGGAAAATGGAAATTTGGATAGCATCATACATGGCAACGGGGTAGATCATCCTGTGATCTCTAGGTGGACATTATCTGAAAGAGTCCGAGTCTTCATATCTATTGCTAAAGCATTGGATTATTTGCACTCGGGTTATCATATTCCCATTGTGCACTGTGATTTAAAGCCTTCTAACGTTCTTTTAGATAGAGAGTGGGAAGCTCATGTCAGTGACTTTGGGACAGCTCGAATACTTGGTCTTCATCTACAAGAAGGTAGTACCCTTTCGTCATCAACAGCTCTGCAAGGCACAGTTGGCTACATGGCACCAGAATTTGCCTACACGAGGAAAGTGACCAGTAAAGCAGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCGACGGGACTCTCGGAAGAGAATGGTTTGGCAATCACTTTGCATGAATTAGTGGCAAAAGCACTTGCAAATGGAATAGAACAACTTGTCAATATTGTGGATCCTTTGTTGACCTGGAATGTTACAAAAGACAATGATGAAGTGTTGGTAGAGCTCTTTAAGCTATCTCTGTGCTGCACCATACCTGATCCTGAACAGAGACCCAATACGAATGAGGTGTTATCTGCCCTAGTGAAGCTTCAAACAACACTGTCTTGTTAA 3648 0.4049 MANAKLLSAKRYKRTKADDSTTIALPIFNPGFTHFHFSISKLQSNFLQYSTVMLSLKISLTTVVVLSIVSIVSHAEASLDVEIEALKAFKNSITGDPSGALADWVDTHNHCNWSGIACDPSSNQVISISLVSLQLQGKISPFLGNISGLQVFDITSNSFTGYIPAQLGLNTQLTKLILYNNSLSGPIPPQLGSLKSLQYLDLGNNFLNGSLPDSIFNCTSLLGIAFNFNNLTGKIPSNIGNLVNLVQIIGYGNNLVGSIPLSVGQLGALRALDFSENKLSGVIPREIGNLTKLEYLELFQNSLSGKIPFELGKCSNLSSLELSDNQLIGSIPPELGNLVQLKKLKLHKNNLNSTIPSAIFQLKSLTNLGLSQNNLEGTISSEIGNMNSLQVLTLHLNKLTGEIPSSITNLTNLTYLSMSQNLLSGELPSNLGVLHNLQFLVLNANHFHGSIPPSITNCTALVNVSLSFNALSGKIPQGFSRSPNLTFLSLASNKMTGEIPDDLYNCSNLSTLSLAINNFSGLIKSDIQNLTKLQRLQLNVNSFTGPIPPEIGNLNQLITLSLSENKFSGQIPTELSKLSRLQGLTLHANVLEGKIPDKLSELKGLTELFLHQNNLVGQIPDTLSKLEMLSYLDLHGNKLNGSIPRSMGKLNQLLVLDLSHNQLIGSIPGDVIANLKSMQMYLNLSYNHLVGNISTELGMLEVIQAIDISNNNLSGSIPRTLSGCRNLFNLDFSGNSISGPIPAEAFSHMDLLESLNLSRNHLDGEIPEVLAELDHLSSVDLSQNDLKGIIPEGFANLSNLVHLNLSFNQLEGPVPKTGVFAHINASSVMGNQDLCGAKFLPPCRKTKHSLSKKGISIIASLGSLAILLVLVILILSRGTKLCNSKERDISVNHEPDYNSALALKRFSPKELENATRFFSADSIIGASSLSTVYKGQMEDGQVVAIKRLNLLQFSANTDKIFKREANTLSQLRHRNLIKIIGYAWQSGKMKALVLEYMENGNLDSIIHGNGVDHPVISRWTLSERVRVFISIAKALDYLHSGYHIPIVHCDLKPSNVLLDREWEAHVSDFGTARILGLHLQEGSTLSSSTALQGTVGYMAPEFAYTRKVTSKADVFSFGIIVMEFLTKRRPTGLSEENGLAITLHELVAKALANGIEQLVNIVDPLLTWNVTKDNDEVLVELFKLSLCCTIPDPEQRPNTNEVLSALVKLQTTLSC 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02270 1215 SUPERFAMILY L domain-like 107 285 - -
Phco4g02270 1215 Gene3D Phosphorylase Kinase; domain 1 880 996 - -
Phco4g02270 1215 PRINTS Leucine-rich repeat signature 269 282 - -
Phco4g02270 1215 PRINTS Leucine-rich repeat signature 650 663 - -
Phco4g02270 1215 SMART LRR_sd22_2 290 319 - -
Phco4g02270 1215 SMART LRR_sd22_2 194 226 - -
Phco4g02270 1215 SMART LRR_sd22_2 362 385 - -
Phco4g02270 1215 SMART LRR_sd22_2 410 433 - -
Phco4g02270 1215 SMART LRR_sd22_2 602 631 - -
Phco4g02270 1215 SMART LRR_sd22_2 650 677 - -
Phco4g02270 1215 PANTHER UNNAMED PRODUCT 253 669 - -
Phco4g02270 1215 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 997 1214 - -
Phco4g02270 1215 SUPERFAMILY Protein kinase-like (PK-like) 897 1210 IPR011009 -
Phco4g02270 1215 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 730 843 - -
Phco4g02270 1215 Pfam Leucine rich repeat 315 375 IPR001611 GO:0005515
Phco4g02270 1215 Pfam Leucine rich repeat 769 810 IPR001611 GO:0005515
Phco4g02270 1215 Pfam Leucine rich repeat 704 762 IPR001611 GO:0005515
Phco4g02270 1215 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 878 996 - -
Phco4g02270 1215 Pfam Leucine rich repeat N-terminal domain 82 119 IPR013210 -
Phco4g02270 1215 Pfam Protein kinase domain 920 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02270 1215 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1046 1058 IPR008271 GO:0004672|GO:0006468
Phco4g02270 1215 SMART LRR_typ_2 266 290 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 602 626 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 530 554 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 434 458 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 194 218 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 338 362 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 749 772 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 410 432 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 650 674 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 773 796 IPR003591 -
Phco4g02270 1215 SMART LRR_typ_2 797 822 IPR003591 -
Phco4g02270 1215 SUPERFAMILY RNI-like 235 542 - -
Phco4g02270 1215 SMART serkin_6 918 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02270 1215 Gene3D Ribonuclease Inhibitor 79 238 IPR032675 -
Phco4g02270 1215 CDD STKc_IRAK 924 1209 - -
Phco4g02270 1215 FunFam Piriformospora indica-insensitive protein 2 334 427 - -
Phco4g02270 1215 Gene3D Ribonuclease Inhibitor 313 572 IPR032675 -
Phco4g02270 1215 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515
Phco4g02270 1215 FunFam MDIS1-interacting receptor like kinase 2 isoform A 234 333 - -
Phco4g02270 1215 ProSiteProfiles Protein kinase domain profile. 918 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02270 1215 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 79 233 - -
Phco4g02270 1215 Gene3D Ribonuclease Inhibitor 242 312 IPR032675 -
Phco4g02270 1215 Gene3D Transferase(Phosphotransferase) domain 1 997 1214 - -
Phco4g02270 1215 SUPERFAMILY RNI-like 517 815 - -
Phco4g02270 1215 Gene3D Ribonuclease Inhibitor 576 847 IPR032675 -
Phco4g02270 1215 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 433 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02270 Phco-Chr4 43496779 43501650 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco4g02270 Pkinase 1.7e-41 CL0016