Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02242 ATGCAGACCCTGTGCAGGCTGCAAACAAGCATGGTGAAAAAGGCGAAAGGGTCTCACTCTACTTCTTCGGCCTCTGCCTCTGCCGCTTCTGGTAAACTAGTTTTGAGGATTAAATCAAATGAGGGAATCAAGAGATCGGTGCGGCAGACCAATTCAAGAAAGAAACCCAAAGCAAAACTGAAGAAGAACAAGCGGAAGTTTGATGCTATGAAACCGAAGAAACCTCCTACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGAAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATGTAGCTACAGAAAAGCGTGCAGAATTTGATAGAGCAATGGCAGAATATAACAAGAAAATGGAAAGTGGAGAGTTTGACGAAACTGATGAGGAATCAGAGTTTGATGAGTAA 483 0.4182 MQTLCRLQTSMVKKAKGSHSTSSASASAASGKLVLRIKSNEGIKRSVRQTNSRKKPKAKLKKNKRKFDAMKPKKPPTAFFYFLEDFRKEFQEKNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATEKRAEFDRAMAEYNKKMESGEFDETDEESEFDE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02242 160 Pfam HMG (high mobility group) box 72 141 IPR009071 -
Phco4g02242 160 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 46 157 IPR031061 -
Phco4g02242 160 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 141 IPR009071 -
Phco4g02242 160 MobiDBLite consensus disorder prediction 49 69 - -
Phco4g02242 160 Gene3D High mobility group box domain 66 156 IPR036910 -
Phco4g02242 160 MobiDBLite consensus disorder prediction 1 29 - -
Phco4g02242 160 SMART hmgende2 71 142 IPR009071 -
Phco4g02242 160 SUPERFAMILY HMG-box 63 145 IPR036910 -
Phco4g02242 160 CDD HMG-box_AtHMGB1-like 73 133 - -
Phco4g02242 160 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02242 Phco-Chr4 43165073 43171823 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phco4g02242 HMG_box 1.4e-18 CL0114