Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02239 ATGATCAAACAGAAAAAAAAACGAGAGATTAAGAAGATTGAGAATAATAGGGATCTCCTCATCACTTTCACCAAAAGAAAACGTGACATTCACAAGAAAGCCAGTGAGTTATCAACTCTTTGTGGAGCAAAAGTTGATATACTTATGCATACTTCATCTGGAAATTGGTTTAGTTACGGGGAACCTTCTCACCAAGCGATGACAGTTTCCAATGATAAAAAAAACCCTTCAGAAGATGTCATTAATCAGCTTGTGAAGGATCAAACAAAATTAGAGATAGATGAACTCTGTGCAAAAAATAAGACACTTACAGATCAAATGCACTATGAGGAAGAACGAGAGAAAGAACTTGCAGAGATTCTGAAGACAAGAAATCCCCATGGTTGGTGGGAGGCCAAAGATCTTAATCGTGAACAAGCCAAAGAAATGAGGGCTTCTTTGATGGAACTCAAACAGAAACTAGAAAATGAACTTTCTATCAAGCGTGGGGAGAAAGATAGGTCTTCTCATCATGCTCCCCCAAATCAAGTGACTGGATTCAATTTTTGCCCTAATTACACTAGAGGAAGTAGCATATCTGAAGTTGTCTTTGGTGCTAATAATGAAGCTTGTGGAATTGCTGCAACTGAAAGTATTCTTCCTGATATTTCTTTTAGTCCGATAGAGGAAGGGAAAGAATTCAAATTTTTTCCATATGGTGAACGTAGGGAAGATTTGTTTGATATTGTTTATCCTCGCAAAAATCTTTATCGTGGATACAGTTTTTTTGTTGATGATCCAAATGATAGTGGTAAATCTGCTTTTGCTTCTTTTCCTGCAAAACAAGGGCAAGGACTTAACCCTATTGATGCAAATGGAAGTACCAGTAGTACTCATGTCTTCTCTTCATTTTCAAATCAATCCCAAGGAGATATCTCATTTCTACCCAATGCAAATAACGAGAATATCGGAATAAGAGGTAGTGAGAATGTTGGTGGAAATGATAGTGGTTCTCTTTTTTCTTCCTCCCCTTTGAATCAACAGCAAGAGACTAATCCGTTTATGGACATTGAAAATGACATGAAAGATGATTTTTCTTTTCCTCCATTTCAATGGTCTTGA 1101 0.3688 MIKQKKKREIKKIENNRDLLITFTKRKRDIHKKASELSTLCGAKVDILMHTSSGNWFSYGEPSHQAMTVSNDKKNPSEDVINQLVKDQTKLEIDELCAKNKTLTDQMHYEEEREKELAEILKTRNPHGWWEAKDLNREQAKEMRASLMELKQKLENELSIKRGEKDRSSHHAPPNQVTGFNFCPNYTRGSSISEVVFGANNEACGIAATESILPDISFSPIEEGKEFKFFPYGERREDLFDIVYPRKNLYRGYSFFVDDPNDSGKSAFASFPAKQGQGLNPIDANGSTSSTHVFSSFSNQSQGDISFLPNANNENIGIRGSENVGGNDSGSLFSSSPLNQQQETNPFMDIENDMKDDFSFPPFQWS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02239 366 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Phco4g02239 366 Gene3D - 15 85 IPR036879 GO:0003677|GO:0046983
Phco4g02239 366 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Phco4g02239 366 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Phco4g02239 366 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Phco4g02239 366 SUPERFAMILY SRF-like 5 67 IPR036879 GO:0003677|GO:0046983
Phco4g02239 366 Coils Coil 133 164 - -
Phco4g02239 366 MobiDBLite consensus disorder prediction 318 342 - -
Phco4g02239 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
Phco4g02239 366 Coils Coil 86 106 - -
Phco4g02239 366 PANTHER MADS BOX PROTEIN 6 156 - -
Phco4g02239 366 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02239 Phco-Chr4 43140787 43142072 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco4g02239 SRF-TF 1.7e-13 No_clan