Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02178 ATGAGTACAGGAGACAGGCCAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGGAGAAAGTACACCCTCTCTAAAGGATAGCTTCCCTCAAACTCTTCCAGACCCTCTACCTCCATCACCTATGGTTGTAGGCAACACCACTGACAATGGCCTTGAAGAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTTTAACCATCCCAATCTACAACACCAAGATGTCTCCATCTATGCAAGTGGAGTCACTGCCACATGTATTGACATCCCTCATTCACAGCATCTAGGTTTGAACATGGGGAACTCCTACATCAACAACACCAACAACATGGATAACCATTTGGTGCAAGAGGTCATTGATGCCCTTCCCTATCAGCAGTCCACTTGGGACCCTACTACTGTTCAGGAATTGCAAGACATAGCCTATGCTAATCAAATAGAACAGCAACAGCAACAAAATGAACAACAATTTCAGCAAATGGAGAATCAAAACTGCAGCCAAAGCTACAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCTCATCTTTGCACACCAATCCCACCATTTGCCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCACTGGCATTTCTTGGAGACCTTCCAATAGGGTCAGACAACACAAATGCATCCTCAGTTTTGTATGATCCCCTATTCCATCTGAACCTTCCTCCACAACCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTTCCTCGTGGCTACAGCTTGCCAACCAACTCAAGGAATGGTTCACTCTTTGGAGGGGATGAGATAGAGGGAGATGGGAGCCAGCTTGACATGGGAATCCTGGAATTCAACAGGGTCACACCCTCTGTTGGCAAGGGAAGGGGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGAAAATACAAAATCTTGAGAAATCTTATCCCAAACCCCACCAAGATTGATAGAGCATCCGTGGTGGGGGATGCCATTGACTACATAAGAGAGCTGATTAGAACAGTCAATGAACTCAAACTATTGGTAGAGAAGAAAAGGTATGGGAGAGAGAGGTGCAAAAGGCCCAAAACAGAAGAAGATGCTGCTGAGAGCTGTAACATAAAACCTTTTGGTGATCCAGATGGGGGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATAGATGATGATGTAACAATCAAACTCTTCCAGAGGAAGAAAATCAACTGCCTGTTGTTTGTCTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTATTTAATAGCAAGATAATTGAAGGTTCCTCAGTCTATGCAAGTGCCATAGCCAACAGGGTCATCGATGTTTTGGACTGTCAATACACAGCATCAGTTCCTCATACAAACAGCTACTAG 1536 0.4499 MSTGDRPKMHEQTGCFDPNTMGESTPSLKDSFPQTLPDPLPPSPMVVGNTTDNGLEENLRLSVEELSFNHPNLQHQDVSIYASGVTATCIDIPHSQHLGLNMGNSYINNTNNMDNHLVQEVIDALPYQQSTWDPTTVQELQDIAYANQIEQQQQQNEQQFQQMENQNCSQSYNPSSILDPPYPSPDLLNLLHLPRCSASSLHTNPTICLTNPTQNTPNFQNPLAFLGDLPIGSDNTNASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGDEIEGDGSQLDMGILEFNRVTPSVGKGRGGKATKHFATEKQRREQLNGKYKILRNLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGRERCKRPKTEEDAAESCNIKPFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDCQYTASVPHTNSY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02178 511 PANTHER TRANSCRIPTION FACTOR BHLH91 8 503 IPR045895 GO:0006355|GO:0048658
Phco4g02178 511 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
Phco4g02178 511 Coils Coil 146 169 - -
Phco4g02178 511 MobiDBLite consensus disorder prediction 152 177 - -
Phco4g02178 511 SMART finulus 319 368 IPR011598 GO:0046983
Phco4g02178 511 CDD bHLH_AtMYC1_like 318 382 IPR045896 -
Phco4g02178 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Phco4g02178 511 MobiDBLite consensus disorder prediction 17 32 - -
Phco4g02178 511 MobiDBLite consensus disorder prediction 152 179 - -
Phco4g02178 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 379 IPR036638 GO:0046983
Phco4g02178 511 Gene3D - 311 384 IPR036638 GO:0046983
Phco4g02178 511 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02178 Phco-Chr4 42498239 42500236 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g02178 HLH 1.5e-10 No_clan