Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02177 ATGAGTAGTTCAAAGTTGAGTGAGTCAGATCGTGGTGAACAAGATATTTACCATTGCCGTCATCGTCATGATCCAGAAATAATAGCTAGACTAGAAGAAATCTTCAAAGAATGCTCACATCCGGACGAAACACGACGCCGTCAAATAGGAGAGGAGCTTGGGCTTGATGCTAAACAAGTAAAATTTTGGTTTCAGAACAAGAAAACGCAATTAAGGACTATAAGCGAGCGATTAGATATCGATGTTCTTCGTCTTGAGAATGAAAGAATACAAACAGAAAACCGTATAATGAGTGAGACTTTGAAGACTGTAGCATGCGCACCTTGTGGGGGTCGATCCATGGGACAAGAAGAGCGAGAACTTCATTTGCAAATCTTGAAGGTAGAAAATATTCTATTAATCAAAGAGTGTGAGAGAGTAATCTCATTCATGGCAAACCATGGGATTGATCCAGAACTACTTCCTGCTATTCCTTCTTCTTCTTCTTCTTCACTTGATACCTTACGAGCAAGTTTGCTAAACCAAACGGTTGGAACTTCACAAAATCCACTCATTCTTCATGATGATCCTCACATTCCTTCTCCTGCTCAACATAATATTCCAGCAGTTAATCAAGATGTTCCTACTGCTACATCAACCCTTTCTCAGGATATTCCTAATCTTAATCATGGCCATAGTCAAGAAATTCCTGCTCCTACACTTGTTCAACATGTTTCTTCTCTTACTGCTACTTCTCCTGCCATTCTTGGTCCCTTTCCCAGTCAGGATGATTCTCTTCTGATTTCTTGTCTTGAGTATAATATTCCAGCTTTGGTTACTGCTCTTGATCAAAATATTCACACACTGGCTTCTACTCATAATCAAAATAATAATAACGTTCCCGCTGCTGAGAAACAAAGCCAAGGACCAAATCCATGTTTAAACGTTCCTTCTGTTACTCCTACCCTAGATCAAGATATTCCACCTCCTTGTCAAGACATTTCGTCTATTCTTCAGGATCATGCGCCATCTCTTGATCTTGATCTGGATGGGATACTTAAAATTTTGAACAACGATATGGTATCCCAACCGACGAGCAGCGAAAATAAAGATACGGAAAAGGCACGAATGTTGAAGATTGCGAATACTGCGATGGAAGAGTTGATGAAACTCTTAAGTATGAACGAACCCTTCTGGTTCAGGTCTCTTGTGGATGAGAGATTCATTCTGCAGCGTGATTGCTACCAAAGGATTTTTCAAAGGAGTAATACCTTAAACGGACCTCATGCTCGAGTAGAGTCTTCGAAAGATTCACGAGTGGTGAAAATGAGTGGGACACAGCTTGTGGAAATGTTTTTAAATTCGGAGAAATGGGTTGATCTATTCCCAACAATTGTTAAAAAAGCCCAAACAATTGAAGTACTCGAAAGTGGTTCGTTAGGAAACCGAAATGGAGCTTTGCAGTTGATGAATGCAGAAATGCACATTCTTTCACCTTTGGTTCCAACTCGGGAATTCCACTTCCTTCGTTATTGTAAACAAATTGAAGCAGGTGTATGGACCATAGGGGATGTGTCAGTTGATTCTTCGACACACAAAACCTCTACTGTTTCTAGCACTCGGAGGCTCCCATCTGGATTGTTGATTCAAGAAATGACTGAGGGATTGTGCAGGGTTTCTTGGGTGGAGCATGTGGAAGTGGATGATAAGATCCAAACTCACGATCTTTTCAGAGATCTTATTTGTGGTAATAATGCATATGGAGCACAAAGATGGGTTTTGGCACTTGAAAGAATGTGTGAGAGGATTGCAAGTGCCTCAAGTGAAACTATACCTAGTTGTGAAAGTGGAGGAGTGATTAGGTCAGCTGAGTCAAGAAGGAATATAATGCGTCTGACTCGTCGTATGGTTAAGTCTTTCTGTGAGAGTTTGTGCATGCAAGATAACACGAGCTTCCCACACCTAACCAGGACGAACAATGCTGGTGTTAGAGTTACCGTTCGAGTGAACATGAGCGAGCCTGGTGAGCTTAAAGGCATGATTCTCAGTGCAGCTACCTCCTTTTGGCTTCCTCTCTCTCCACAACATGTTTTTGACTACTTGATAGATGACAGGAAACGAGCTAAGTGGGATGTTCTATGCTCTGGAAACTCAGGGCACGAGATTCAACGCATCACAACAGGTAGTAATCCTGGAAACTGTGTTTCAATCTTGCGGCCTTTCATCCCTAAAGAGAACAATATAGTGATTCTCCAAGAAAGTTATGGAGATGCTTTGGGATGTGTGATGTTATATGCTCCTTTTGACATGAAGGCACTGAACTACGTGATGAACGGAGAAGACACGTCACTGTTTCCGATTCTTCCCTCTGGCTTCACCATATCTAGGGATGGTAAACCAGATGTTCCTGAAGGAGAATCTGGAGAAGTTGGGAAATCAGGAGGTTCCTTGGTGACTCTAATGTTTCAAATTTTGGCTTCTAGTCCATCTAGAATGAGCATGGTAGACATCGAAGTTGTAGGTAATGTTAATGCACTTGTCACCTCAACAGTAGAGAATATTAAAGATGCTTTGAATTGTTCAAAGTAA 2568 0.4132 MSSSKLSESDRGEQDIYHCRHRHDPEIIARLEEIFKECSHPDETRRRQIGEELGLDAKQVKFWFQNKKTQLRTISERLDIDVLRLENERIQTENRIMSETLKTVACAPCGGRSMGQEERELHLQILKVENILLIKECERVISFMANHGIDPELLPAIPSSSSSSLDTLRASLLNQTVGTSQNPLILHDDPHIPSPAQHNIPAVNQDVPTATSTLSQDIPNLNHGHSQEIPAPTLVQHVSSLTATSPAILGPFPSQDDSLLISCLEYNIPALVTALDQNIHTLASTHNQNNNNVPAAEKQSQGPNPCLNVPSVTPTLDQDIPPPCQDISSILQDHAPSLDLDLDGILKILNNDMVSQPTSSENKDTEKARMLKIANTAMEELMKLLSMNEPFWFRSLVDERFILQRDCYQRIFQRSNTLNGPHARVESSKDSRVVKMSGTQLVEMFLNSEKWVDLFPTIVKKAQTIEVLESGSLGNRNGALQLMNAEMHILSPLVPTREFHFLRYCKQIEAGVWTIGDVSVDSSTHKTSTVSSTRRLPSGLLIQEMTEGLCRVSWVEHVEVDDKIQTHDLFRDLICGNNAYGAQRWVLALERMCERIASASSETIPSCESGGVIRSAESRRNIMRLTRRMVKSFCESLCMQDNTSFPHLTRTNNAGVRVTVRVNMSEPGELKGMILSAATSFWLPLSPQHVFDYLIDDRKRAKWDVLCSGNSGHEIQRITTGSNPGNCVSILRPFIPKENNIVILQESYGDALGCVMLYAPFDMKALNYVMNGEDTSLFPILPSGFTISRDGKPDVPEGESGEVGKSGGSLVTLMFQILASSPSRMSMVDIEVVGNVNALVTSTVENIKDALNCSK 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02177 855 Gene3D - 4 81 - -
Phco4g02177 855 SUPERFAMILY Bet v1-like 365 597 - -
Phco4g02177 855 SMART START_1 372 595 IPR002913 GO:0008289
Phco4g02177 855 Pfam START domain 373 595 IPR002913 GO:0008289
Phco4g02177 855 Gene3D - 372 570 IPR023393 -
Phco4g02177 855 Pfam Homeodomain 20 72 IPR001356 GO:0003677
Phco4g02177 855 Coils Coil 75 95 - -
Phco4g02177 855 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 852 IPR042160 -
Phco4g02177 855 SUPERFAMILY Bet v1-like 652 840 - -
Phco4g02177 855 CDD START_ArGLABRA2_like 367 594 - -
Phco4g02177 855 ProSiteProfiles 'Homeobox' domain profile. 20 74 IPR001356 GO:0003677
Phco4g02177 855 ProSiteProfiles START domain profile. 363 598 IPR002913 GO:0008289
Phco4g02177 855 CDD homeodomain 20 72 IPR001356 GO:0003677
Phco4g02177 855 SMART HOX_1 18 78 IPR001356 GO:0003677
Phco4g02177 855 SUPERFAMILY Homeodomain-like 14 73 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02177 Phco-Chr4 42472386 42480863 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g02177 START 2.9e-38 CL0209