Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02169 ATGCCACAAATAATGAGGTTTTCAACACTGGTAGTTGTGTTGCTTTTTTGTTTTTCTCCTACGCTTGTAGTCCTTGGTCTGGGCTACTCAGATCACACTACTTTGAGAGTGCTGTTGGAAGTGAAGAAGTCTTTTGTGCAAGACCCACGAAATGTTCTGAGTGATTGGTCAGAGGATAACATTGACTACTGCAGTTGGAGAGGGGTGTCATGTGAATTGAACTCTGACTCAAACTCAATTTCAAACTCTTTAGATGGTGACTCCATGCAAGTGGTGGGTCTCAATCTTTCTGACTCGTCACTCACCGGGTCAGTATCACCTTCACTCGGTCTTTTGAAAAACCTGCTCCACCTTGATCTCTCCTCCAACAGCCTCACAGGTCCCATTCCACCCAATCTCTCCAACCTCTCTTCCTTGGAATCTTTGCTTCTCTTCTCCAACCAACTCACGGGTCACATACCCATAGAGTTCGGCTCGCTCAAGAGTCTCCGAGTCATGCGACTCGGTGACAATGCATTAACGGGAACGATACCCGCTTCTCTCGCCAACCTGAATAATTTGGTCAACCTTGGCTTGGCTTCCTGCGGACTCACCGGGTCTATTCCCACTCAACTTGGTCAACTCAAACTCATGGAGAATCTGATTCTGCAAGACAACGAGTTAATGGGTCCGATTCCGACCGAGTTAGGGAACTGCTCAAGCCTCACCATCTTCACTGCAGCTAACAACAAACTGAATGGATCAATCCCGAGTGAACTGGGTCGACTCAGCAATCTGCAAATTCTCAACTTTGCCAACAACAGCATATCAGGGAAGATTCCGAGTCAACTCGGTAATATGAGTCAACTCGTTTACCTGAACTTCATGGGGAACCAGCTCGAGGGTACCATTCCACCGTCTCTAGCTCAACTGGGCAATCTTCAAAATATGGACTTCTCAATGAACAATATCAGTGGAGGAATCCCAGAGGAGTTAGGCAACTTGGGTGAGCTAGCTTATTTGGTTCTGTCTGGTAACAACCTCAATGGTGTCATACCAAGGACCATATGTTCTAATGCAACAAGTTTGGAGCACTTGATGTTGTCAGAAAGTGGACTTCATGGTGAGATTCCAGCTGAGTTGAGTCAATGCCAGCAACTGATGCAACTTGATTTGTCCAACAATGCACTCAACGGGTCCATACCTCTTGAGCTTTATGGGTTGCTGCGGTTAACTGATCTCCTCCTGAACAATAACAGCTTGGTTGGTTCCATCTCCCCCTTCATAGGGAACCTCAGTGGCTTGCAGACTCTTGCTTTGTTTCACAATAATTTGGAGGGTGTTCTGCCGAGAGAGATTGGAATGCTGGGCAAATTGGAAATTTTGTATCTTTATGATAACCAATTGTCTGGGGCAATACCTGTGGGGATTGGTAATTGTTCTAGCTTGCAAATGATTGATTTTTTTGGAAACCGTTTCAGTGGGGAAATTCCCGTCACTATTGGAAGGCTGAAAGAGTTGAATTTCCTTCACCTTAGACAGAATGAGCTAGTGGGTGAGATTCCAGCAACCTTGGGTAATTGTCATAAACTGAACATTCTGGATTTGGCTGACAATCAGCTCTCAGGTGCAATTCCTGCAACGTTTGGATTCCTCAAGGAATTACAGCAACTCATGATCTACAACAATTCCCTGGAAGGTAATCTCCCTCACCAACTGATAACTGTAGCAAACTTGACCAGAGTGAATCTTTCTAAGAACAGATTGAATGGTAGTATAGCTGCATTGTGTAGCTCTCAGTCATTTCTTTCTTTCGATGTTACTGACAATGAGTTTGACGGTGAAATTCCTTCCCAAATGGGAAACTCACCCTCCCTTGAGAGACTAAGATTAGGTAACAATAAATTTTCTGGAGAAATTCCAAGGACATTGGGAAAAATCCGTGACCTGTCATTGTTAGACCTCTCAGGAAATTCACTCACTGGACCAATACCAGCTGAGCTTTCTTTGTGCAACAAACTGGCTTATATTGATTTGAACAGTAATTTCCTTTTCGGACAAATACCATCATGGCTTGGAAGTTTGTCTGAGTTGGGAGAGCTAAAGCTGTCCTCCAATAATTTTTCTGGGCCACTTCCATTAGGCCTATTCAAATGTTCTAAGTTGCTAGTTCTCTCTCTAAATGACAACTCCCTCAATGGAAGTCTCCCATCCGATATTGGTGAACTTGCAAACCTCAATGTCCTCATACTTGACCGCAATAAGTTTTCTGGACCAATCCCTCAGGAGATAGGCAAGTTGATCAAGCTTTATGAGCTCCGGCTCTCCAGGAATGGATTCCATGGTGAGATGCCAGCTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTTAGTTACAATAATCTCTCAGGTCTCATCCCACCTTCTCTTGGGACACAGTCAAAGTTAGAAGCTCTTGATCTTTCCCACAATCGACTGACTGGAGAAGTCCCTCCACAAATTGGGGAAATGAGCAGTTTGGGAAAGCTTGATCTCTCTTACAACAACCTTCAAGGAAAATTGGATAAGCAGTTTTCCCGCTGGCCAGACCAGGCATTTGAAGGAAACCTACATCTTTGTGGAAGCCCTCTTGAGAGCTGCCACCGAAATGACGACTCTGGGAATGCAGGCCTAAATGAATCAACAGTAGTGATAATCTCTTCCCTTTCAACTTTAGCTGCAATTGCACTTCTGATACTCGCAGTTAGAATCTTTTCCAAAAACAAGCAAGAATTTTGCAGGAAAGCCAGTGAAGTGAATTATGTTTACTCTTCTTCTTCATCACAAGCACAGAGAAGACCGCTGTTCCAACTAAATGCAGCTGGAAATAGAGATCTCAGATGGGAAGACATCATGGATGCCACGAACAATCTAAGTGAGGACTTCATAATTGGCTCAGGCGGTTCAGGGAAAATCTACAAAGCTGAATTGGCATCTGGAGACACTCTGGCTGTCAAGAAGATTTCATCAAAAGATGAATTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTAGGGAGGATTAGGCACAGACATCTGGTGAAGCTAATAGGATATTGTAGCAATAGAAACAAAGAAGCAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTGTTTGGGATTGGCTTCACGGGAAACCAGGCAAGGAGAGCAAAGGAAAGAGCAGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTAGGATTAGCTCAAGGAGTGGAATACCTGCATCACGATTGCGTCCCAAAGATCCTTCACAGGGACATCAAATCCAGCAACCTATTGCTAGACTCAAAAATGGAGGCACACTTGGGAGATTTTGGTCTGGCAAAAGCACTAACCGAGAATTATGACTCTAATACTGAGTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCTCCAGAGTATGCATACTCCCTACAGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAATAGTGTTCATGGAACTTGTTAGTGGTAAAATGCCAACAAATGAAATTTTTGGAGATGAGATGAACATGGTGAGATGGGTAGAAATGCACGTGGATAAGCATGGCTTTGCCGGTGAGGAATTGATAGATCCGGAATTGAAACCTCTTTCACCTGATGAAGAGTATGCAGCATTCAAAGTGCTTGAGATAGCCTTACAATGCACAAAAGCTACACCACACGAGAGGCCATCTTCAAGGAAAGCATGCGATCTTCTCCTCCATGTATTCAACAACAGGATGATGAACTTTGAGAAGATGAATTTGGAATATTACAAATGA 3822 0.4356 MPQIMRFSTLVVVLLFCFSPTLVVLGLGYSDHTTLRVLLEVKKSFVQDPRNVLSDWSEDNIDYCSWRGVSCELNSDSNSISNSLDGDSMQVVGLNLSDSSLTGSVSPSLGLLKNLLHLDLSSNSLTGPIPPNLSNLSSLESLLLFSNQLTGHIPIEFGSLKSLRVMRLGDNALTGTIPASLANLNNLVNLGLASCGLTGSIPTQLGQLKLMENLILQDNELMGPIPTELGNCSSLTIFTAANNKLNGSIPSELGRLSNLQILNFANNSISGKIPSQLGNMSQLVYLNFMGNQLEGTIPPSLAQLGNLQNMDFSMNNISGGIPEELGNLGELAYLVLSGNNLNGVIPRTICSNATSLEHLMLSESGLHGEIPAELSQCQQLMQLDLSNNALNGSIPLELYGLLRLTDLLLNNNSLVGSISPFIGNLSGLQTLALFHNNLEGVLPREIGMLGKLEILYLYDNQLSGAIPVGIGNCSSLQMIDFFGNRFSGEIPVTIGRLKELNFLHLRQNELVGEIPATLGNCHKLNILDLADNQLSGAIPATFGFLKELQQLMIYNNSLEGNLPHQLITVANLTRVNLSKNRLNGSIAALCSSQSFLSFDVTDNEFDGEIPSQMGNSPSLERLRLGNNKFSGEIPRTLGKIRDLSLLDLSGNSLTGPIPAELSLCNKLAYIDLNSNFLFGQIPSWLGSLSELGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPSDIGELANLNVLILDRNKFSGPIPQEIGKLIKLYELRLSRNGFHGEMPAEIGKLQNLQIILDLSYNNLSGLIPPSLGTQSKLEALDLSHNRLTGEVPPQIGEMSSLGKLDLSYNNLQGKLDKQFSRWPDQAFEGNLHLCGSPLESCHRNDDSGNAGLNESTVVIISSLSTLAAIALLILAVRIFSKNKQEFCRKASEVNYVYSSSSSQAQRRPLFQLNAAGNRDLRWEDIMDATNNLSEDFIIGSGGSGKIYKAELASGDTLAVKKISSKDEFLLNKSFIREVKTLGRIRHRHLVKLIGYCSNRNKEAGWNLLIYEYMENGSVWDWLHGKPGKESKGKSSLDWETRFKIAVGLAQGVEYLHHDCVPKILHRDIKSSNLLLDSKMEAHLGDFGLAKALTENYDSNTESNSWFAGSYGYIAPEYAYSLQATEKSDVYSMGIVFMELVSGKMPTNEIFGDEMNMVRWVEMHVDKHGFAGEELIDPELKPLSPDEEYAAFKVLEIALQCTKATPHERPSSRKACDLLLHVFNNRMMNFEKMNLEYYK 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02169 1273 Gene3D Ribonuclease Inhibitor 33 204 IPR032675 -
Phco4g02169 1273 SUPERFAMILY L domain-like 594 873 - -
Phco4g02169 1273 FunFam Leucine-rich repeat receptor-like protein kinase 1048 1270 - -
Phco4g02169 1273 Gene3D Ribonuclease Inhibitor 205 384 IPR032675 -
Phco4g02169 1273 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 588 880 - -
Phco4g02169 1273 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Phco4g02169 1273 SUPERFAMILY L domain-like 310 676 - -
Phco4g02169 1273 Gene3D Phosphorylase Kinase; domain 1 927 1047 - -
Phco4g02169 1273 ProSitePatterns Protein kinases ATP-binding region signature. 973 996 IPR017441 GO:0005524
Phco4g02169 1273 Gene3D Ribonuclease Inhibitor 543 880 IPR032675 -
Phco4g02169 1273 Gene3D Ribonuclease Inhibitor 385 542 IPR032675 -
Phco4g02169 1273 SUPERFAMILY Protein kinase-like (PK-like) 953 1253 IPR011009 -
Phco4g02169 1273 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 297 396 - -
Phco4g02169 1273 ProSiteProfiles Protein kinase domain profile. 967 1258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02169 1273 SMART serkin_6 967 1258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02169 1273 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 210 281 - -
Phco4g02169 1273 Pfam Protein kinase domain 972 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02169 1273 PRINTS Leucine-rich repeat signature 833 846 - -
Phco4g02169 1273 PRINTS Leucine-rich repeat signature 812 825 - -
Phco4g02169 1273 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 928 1047 - -
Phco4g02169 1273 Gene3D Transferase(Phosphotransferase) domain 1 1048 1270 - -
Phco4g02169 1273 SUPERFAMILY RNI-like 93 415 - -
Phco4g02169 1273 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515
Phco4g02169 1273 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 205 - -
Phco4g02169 1273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1098 1110 IPR008271 GO:0004672|GO:0006468
Phco4g02169 1273 SMART LRR_typ_2 497 521 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 112 136 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 784 809 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 736 760 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 328 352 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 688 712 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 833 864 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 425 448 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 160 184 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 256 280 IPR003591 -
Phco4g02169 1273 SMART LRR_typ_2 449 473 IPR003591 -
Phco4g02169 1273 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 491 587 - -
Phco4g02169 1273 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 510 1252 - -
Phco4g02169 1273 FunFam Uncharacterized protein 397 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02169 Phco-Chr4 42379219 42383144 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco4g02169 Pkinase 6e-44 CL0016