Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02160 ATGAACTGGGTTCGTGGAGACTCACTCGGCCATGGAACCTTTGCCACCGTCAACATCGTCGTTCCTGCAAACGGCTCCACTTTTTTCCCTTCTCCACTCGCCGTCAAATCCTCTGTTTCCCACAACGCCAGTTTGCTAAAAAATGAAAAGGAGATACTCTATCGCCTTGGCTCTTCCCCTTACATCATCAACTGTTTCGGTCACGATCACACCGTCGAGAACGGTGAGGAGTTCTACAACGTCTTCCTCGAACAGGCCGCCGGAGGTTCCCTCGCCGATCAGGTCAAGAAACACGGCGGAAGCCTCCCGGAGCCTTTCGTGCGGCGATGCACGAGGTCCATCGTGGAAGGGCTCAGACATATTCACGAGCACGGTTTTGTTCACTGCGACGTGAAGCTTCAAAACGTTCTCGTTTTCGACAACGGCCAGGTTGCAAGAATGATGAAACACCTTAGCGAAAATGAAACAATACCAACTTACATGTATTGGTTAAATGAGGGACGTAATAAAGATTATCAAAGATTTCCTTATATCAAGATTAATTTTGATGGAGCATTTATAATTCTTGGAAACAAAGCAGGCGCAGGAGGGCTTGTGAGGGATTGGAGAGAGTTTATCTTTGGTTTCTCTAGTGGCTTGGCAAATTGTTTAGTATTGGAGACTAAATTAGAGGCAATCAAGATTAGAATTGAAACAACAATTTCTAAGGGATACAAAAACTTGATGGTTGAAAGTGATTCTAAAGTTGCCATCGATATCATTACTAGTCTTGTAGCCCAACAAAGCAATGAGGATACAAGTCAAAGTCAAAATGTTATCTCTTCAATCATTGAGATAAGTAAGACGACTAACAATATTCATTAG 864 0.4375 MNWVRGDSLGHGTFATVNIVVPANGSTFFPSPLAVKSSVSHNASLLKNEKEILYRLGSSPYIINCFGHDHTVENGEEFYNVFLEQAAGGSLADQVKKHGGSLPEPFVRRCTRSIVEGLRHIHEHGFVHCDVKLQNVLVFDNGQVARMMKHLSENETIPTYMYWLNEGRNKDYQRFPYIKINFDGAFIILGNKAGAGGLVRDWREFIFGFSSGLANCLVLETKLEAIKIRIETTISKGYKNLMVESDSKVAIDIITSLVAQQSNEDTSQSQNVISSIIEISKTTNNIH 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02160 287 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Phco4g02160 287 CDD RNase_H_like 180 256 IPR044730 -
Phco4g02160 287 Gene3D Transferase(Phosphotransferase) domain 1 2 154 - -
Phco4g02160 287 Pfam Reverse transcriptase-like 181 284 IPR002156 GO:0003676|GO:0004523
Phco4g02160 287 SUPERFAMILY Protein kinase-like (PK-like) 3 144 IPR011009 -
Phco4g02160 287 SMART serkin_6 3 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02160 287 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 142 - -
Phco4g02160 287 ProSiteProfiles Protein kinase domain profile. 3 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02160 287 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Phco4g02160 287 Pfam Protein kinase domain 5 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02160 287 Gene3D - 177 287 IPR036397 GO:0003676
Phco4g02160 287 SUPERFAMILY Ribonuclease H-like 177 261 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02160 Phco-Chr4 42302487 42303912 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Phco4g02160 Pkinase 3.2e-17 CL0016