Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02158 ATGGTTACCCCACAGCCACAGCTTCAGGTTCAGCCTCCACAGCCCGCACCATCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCCCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCACAGTGAGTATGCACGTGTTAATCCTAGGGATTGTCGCTATTGGTTGAGTGGCAACTGCTTGAATCCCAAATGTTCATTTCGTCATCCACCTCTTGATGGTTTGTTAGGAACACAGGCTGCCACAGCAGGTGGGCCATCTGTATCTGCACCCCAATCACAGATTCCAACAGCATCTGCAACACATGCACCTTATAATTCCAGTAAGCAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCTTTCATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGCTGATAATCCAAGTTTTAAGAAGCCTTTTGGAACCAATGAAAAGTATACTCAGGAAAGGAAAATTTCCCATGGAAATGTTGCAAAGTTAGGTGGAGGCCCTGAACCGAAACCTGCCCCAAAAATTGAATCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGTAATGCCACCACCCTCTGTAGGATTTGATAATGAGACTTCTAGGTTTAAGACAAGTTCTCCACCAGTAACAAATGGCCCTACTGTGGTCCGGTCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCACAGTGGCAAGGATAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTCGATGTCCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAGGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGAACCTGGACTCTTTGAATGAATATGATTTAGGGCATTCTGGTGATTATGGTTTAGCAGCTGATATTGATCGGGAAAGATTTCGTGTGCCCCAAGGTTATGAGTCATATGATCACATGCAGGAACCATATGTTTGGGAGCAGCATAGGAAGGCTTCAGCTCATTTAGACAGAAGGACTCGTCGCAGATCTGACAGTCCTGAAAATGCCGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGAAAGGGCAATGGTTTGAAATCTGTTGTTAGTCATGATTATGCCCTTGAGGGTCATGGTGAGGAACAAAGTCATCGATCCTTCCCTCGGAAGGAGTCACTCCAGTTACCTCTGAATGAGAGCTCCCTTGGTAATCGCTTCCGTGGTAGAATAAAAATTCCAGCAAATGGTGGTGCTGATCAGCTAGAGAGGGATGACAGAGGGAGAAATAGGGGCAGGTTGTTGTCTGGAAGGTTGCAGGCCACTCAGCAGGGACGGATCCATGATAGAATGCGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCAAAGGATCGATTGATGGGGAGAGAACTAATAGGTGGTGATTGGAGTGATTTTGCTGGGCCAAAAAGTCTTTCTGAGCTTAAAAATGGGAGGAACACCGAGAATAGGGAACTACAACCATTGGGAAAGAGAGGAACTTTTAGAGATGATCACCCACTACCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTCTGAAGGAGAAGAAGAGAGGAGGAGCTGGAGGCAGAGCTGGTGCAGACTCAGGGAATGGGAAATCATCTGATATTAAAAATGAAGAAGTTACCAATGGCTCAGATCCTACACCGGTCACGAACACACAAAACGGTGTGCTGTCTGAGACCAAGGAATATGCCAACAATCAAAACAATGAAGAATCCAAGCTTGAGGTGAGTGATGCAGTTGGAGGAGACACTGTTGCAACTGATGGTCAATATGAGGAGGGAATGTACGATGAAGCTGGTGAAGATCAGTATTACGAAGGTGATGAACCGAGAGAAGGTGATTACGAGTATGAGCAAGGTGATGATGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAAGAGGAAGATTACGTGGATGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2127 0.4532 MVTPQPQLQVQPPQPAPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVSAPQSQIPTASATHAPYNSSKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAQVPVTSQGADNPSFKKPFGTNEKYTQERKISHGNVAKLGGGPEPKPAPKIESAPKRNMFELEKVMPPPSVGFDNETSRFKTSSPPVTNGPTVVRSNRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLGHSGDYGLAADIDRERFRVPQGYESYDHMQEPYVWEQHRKASAHLDRRTRRRSDSPENAEVSDLRHHLSKRRKGNGLKSVVSHDYALEGHGEEQSHRSFPRKESLQLPLNESSLGNRFRGRIKIPANGGADQLERDDRGRNRGRLLSGRLQATQQGRIHDRMRGRLQDDERRNSKDRLMGRELIGGDWSDFAGPKSLSELKNGRNTENRELQPLGKRGTFRDDHPLPEDDLQFDGPKPLSEILKEKKRGGAGGRAGADSGNGKSSDIKNEEVTNGSDPTPVTNTQNGVLSETKEYANNQNNEESKLEVSDAVGGDTVATDGQYEEGMYDEAGEDQYYEGDEPREGDYEYEQGDDGYYEYEQGEEGENQEEDYVDEDGDDFAKKIGVIHS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02158 708 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Phco4g02158 708 Pfam RNA-binding, Nab2-type zinc finger 122 142 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 1 22 - -
Phco4g02158 708 Pfam Zinc-finger containing family 25 80 IPR041686 -
Phco4g02158 708 Gene3D - 113 188 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 581 625 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 645 672 - -
Phco4g02158 708 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Phco4g02158 708 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Phco4g02158 708 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Phco4g02158 708 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Phco4g02158 708 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 706 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 362 672 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 521 571 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 362 386 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 449 463 - -
Phco4g02158 708 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Phco4g02158 708 MobiDBLite consensus disorder prediction 404 419 - -
Phco4g02158 708 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Phco4g02158 708 Gene3D - 16 81 - -
Phco4g02158 708 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 475 502 - -
Phco4g02158 708 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02158 Phco-Chr4 42266106 42269497 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco4g02158 zf-CCCH_3 4.6e-12 CL0537