Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02150 ATGTCTTTTGCTGCTCCGGGTTCCCTTTTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGATTGGTTGCAACTCAGCCCCTTAAAGCTGGTCAAATTGTCCTAAAAGACTCTCCCATTCTGCTGTATTCAGCTTTGCCCTTGATCAGACAGTCTGTGTCATCATCGTCCTCTGCCTCTATTTCATGTTTCTGTGATCACTGCTTCAGAACCTTGCCTACAATTTTACAGGGAGATTCTTCATTATCAGCAGTTTTGTGCCCCAATTGTCACTACCATCGCTTCTGCAGCTCAAGTTGTCTTTCAAAGGCATTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGTGTTATCTAGTCTCAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGCGCCAAGTCCAGGCTAATTTTCTCGTAGCTGCCTACAATCTTGCCAATATCTCCCCTTCAGACTTCCAAATTATGCTTTCTCTCCAGGGTTCTCCTGATGATACCACCATTGCCGCAGCGCAGTTTCTACACCCCCTTATTTCATCTCTCTGCTCACTTTCTCTCATTAGTCCCCTCAATGGATTTTCTTTAGAACTCACTTGTGCACTTCTTGTCAAGGACAAGGTCAATGCCTTTGGAATAATGCAGCCCTTCTCTGCAGATGACGACCAGAGGTCTGTCAGAGCTTATGGTATTTACCCTTATGCTTCCTATTTTAACCATGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGACAGCAATCCACATGAAGAAGGCCATAATACTGACTTTATTATTAGGATGATTAATGATGTTCCCCAAGGAAGGGAGATCTGCTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAAAAGAGATTGATTGAAGATTATGGCTTCTCCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAAATAATGCTGAGGATGAAGAGGAAGCTATGGATGAGGACCAATATGAAATTATGGCAGTGTCAGACAGTGACAAACATGCCCTTGAAGACAATAATGATTTCCCACATGCATATTTCTTTTTAAAATACATGTGTGAGAGAACGAATTGCTGGGGAACATTAGCTCCATTACCTCCGCAGGGTGATACTCCATCTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGTGACAATACCTTTGATATTGATGAAGATAAAAGGTACAGATATGAAGTAATTGGTTACCAAGGAAAAAGACTGACTAGTTTTTCTGGCCATATGGATAGTCAGAGTCAGACTGAATTTTTTTTCGTTGTTGTTATTCATTTCTGGTTCGACCTAGTAGATGAGGGGAATTCTTCCTAG 1380 0.4181 MSFAAPGSLLKVEEIQGRGRGLVATQPLKAGQIVLKDSPILLYSALPLIRQSVSSSSSASISCFCDHCFRTLPTILQGDSSLSAVLCPNCHYHRFCSSSCLSKALNSSHSSWVCQVLSSLRANSLLLEQPLERQVQANFLVAAYNLANISPSDFQIMLSLQGSPDDTTIAAAQFLHPLISSLCSLSLISPLNGFSLELTCALLVKDKVNAFGIMQPFSADDDQRSVRAYGIYPYASYFNHDCLPNACRFDYVDSNPHEEGHNTDFIIRMINDVPQGREICLSYFPVNENYSSRQKRLIEDYGFSCNCDRCNVESNWSDNDSVENNAEDEEEAMDEDQYEIMAVSDSDKHALEDNNDFPHAYFFLKYMCERTNCWGTLAPLPPQGDTPSNVMECNVCGKLKSDNTFDIDEDKRYRYEVIGYQGKRLTSFSGHMDSQSQTEFFFVVVIHFWFDLVDEGNSS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02150 459 Pfam SET domain 19 283 IPR001214 GO:0005515
Phco4g02150 459 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
Phco4g02150 459 Gene3D - 64 123 - -
Phco4g02150 459 Gene3D SET domain 21 310 IPR046341 -
Phco4g02150 459 Coils Coil 319 339 - -
Phco4g02150 459 Gene3D - 128 210 - -
Phco4g02150 459 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 411 IPR044238 -
Phco4g02150 459 SMART set_7 8 290 IPR001214 GO:0005515
Phco4g02150 459 SUPERFAMILY SET domain 10 311 IPR046341 -
Phco4g02150 459 CDD SET_SMYD 209 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02150 Phco-Chr4 42166077 42168362 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco4g02150 SET 2.6e-12 No_clan