Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02144 ATGGAGAACAACCATGTTCAGCTTTTGCCTCATCTCACTGTGACACTTCTTGTGATTACTGTTTTGTTTCCTGTGACTGAATGTGCGGCAGTTTCCTCCATCAAGACTGATGCGCAGGCTCTTCTCATGTTCAAAAGGATGATTCAGAACGATCAAGGTGGAGTTTTGTCAGGATGGAAGCTGAATAAGAATCCATGCAGCTGGTATGGAGTCTCTTGCACCCTTGGAAGAGTTACTCAGCTTGATATTAGTGGGAATAATAACCTTGCTGGGACTATATCTCTTGACGCTTTGTCTTCTTTAGATATGTTATCTCTTCTGAAACTGTCTTTGAATTCATTTTCTGTAAATTCTACCTCTTTGCTTCGGCTCCCATATGGTTTGACGCAGCTTGATCTATCCTTTGGAGGGGTTACAGGCCCTGTCCCTGAGAACCTTTTCTCCAAGTGTCCAAATCTTGTTGTTGTTAATCTTTCTTACAACAACTTAACAGGTCCTATTCCTGAAAATTTCTTACAGAATTCTGGTAAACTGCAGACACTTGACCTATCTTCCAACAACCTGTCAGGGTCTATTTTTGGCCTGAAAATGGATTGCATTTCCTTGTTGCAACTTGATCTATCTGGAAACCGCTTGTCAGACTCAATTCCACTCTCTTTGTCAAACTGTACCAGCCTTAAAAGTTTGAATTTAGCTAACAATATGATTTCTGGGGAAATTCCCAAAGCTTTAGGTCAGTTAAACAAACTACAGACTCTGGATCTTTCCCACAACCAACTCACAGGCTGGATCCCTTCTGAATTGGGAAATGCATGTGCTTCCCTTTTAGAGGTTAAACTTTCTTTCAACAACATCTCCGGGTCAATCCCATCTGGTTTCTCCTCATGCACTTGGCTGCAACTTCTTGACATATCTAACAACAACCTGTCAGGACAGTTAGCAGGGTCAATCTTTCAGAACCTCGGTTCATTGCAGGAACTGAGGCTTGGGAATAATGCTATCACTGGTCAATTTCCATCTTCAATATCTTCCTGCAAAAATTTGAGGATTGCGGACTTCAGCTCAAACAAAATTTATGGATCTATCCCCAGGGATTTATGTCCAGGGGCAGCCTCACTTGAGGAGCTGAGAATGCCAGATAATCTTATTATAGGTGAAATCCCAGCTGAACTGTCAAAGTGCTCACAGCTGAAGACACTTGATTTTAGTCTGAACTATCTCAATGGTACAATTCCCGATGAGCTTGGACAACTTGAAAATCTTGAGCAGCTGATAGCATGGTTCAATGGTTTGGAAGGAAAAATTCCACCGAAGCTGGGCCAGTGCAAGAATCTTAAGGATCTCATACTGAATAATAATCATCTCACTGGTGGAATTCCCATTGAGTTATTCAACTGCAGAAATCTTGAATGGATATCGCTGACAAGCAATGAGCTTAGTGGTGAAATACCGCGTGAGTTTGGTCTCTTGACAAGGTTAGCAGTTCTGCAGCTTGGAAACAACAGCTTGACTGGCGAGATACCTGCAGAGCTAGCGAATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGCGAGATTCCTTCAAGACTAGGAAGACAGCAAGGAGCAAAATCCTTGTTTGGGATCCTTTCAGGGAACACTTTGGTGTTTGTAAGAAATATTGGAAACTCATGCAAAGGAGTTGGAGGTTTGCTTGAATTCTCTGGTATTCGACCTGAAAGACTCTTGCAGGTCCCAACATTGAGGACTTGTGACTTCGCAAGACTCTATTCTGGTCCTGTCCTCAGCTTGTTCACCAAGTACCAGACTCTGGAGTATCTTGATCTTTCATATAACGAGCTTCGTGGAAAAATCCCAGATGAATTCGGAGACATGGTGGCTTTACAAGTTCTTGAATTATCTCACAATCAGCTATCTGGAGAAATCCCTTCAACATTTGGCCAGCTAAAAAATTTGGGTGTGTTTGATGCATCACACAATAGATTGCAGGGTCATATTCCAGACTCATTCTCAAACCTCTCATTTTTGGTGCAAATTGATCTATCTCACAATGAGTTAACAGGGCAAATTCCTTCTAGGGGACAACTGAGTACACTTCCAGCTTCCCAGTATGCAAATAACCCTGGCCTTTGCGGTGTACCATTGCCTGACTGCAAGAGTGAAAATAGCCAACCCACAACAAATCCAACTGATGATGCTGGCAAAGGGGGCCATAAAACAGCAACTGCAACATGGGCAAACAGCATTGTAATGGGAATTCTCATCTCTGTTGCTTCTGTATGTATTTTAATTGTGTGGGCAATTGCAATGCGCGCAAGGAGGAAGGAGGCCGAAGAAGTCAAGATGCTCAATAGCTTACAAGCATGCCATGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCTCTGAGCATCAATGTTGCAACATTTCAGAGGCAGCTGAGGAAACTCAAATTCTCCCAGCTGATTGAAGCAACTAATGGCTTCTCGGCAGAAAGCCTCATTGGGTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTCAAAGACGGCTCAAGTGTCGCCATAAAGAAGCTCATTCGACTGAGCTGCCAGGGTGATCGAGAATTCATGGCAGAGATGGAAACCTTGGGGAAGATCAAGCACAGAAATCTTGTTCCTCTGTTAGGGTACTGCAAAGTGGGGGAGGAGAGGCTCCTTGTTTATGAATACATGGAGTATGGAAGCTTAGAAGAGATGCTTCATGGGAGAATCAAAACGCGTGATCGCCGCATTTTGACATGGGAAGAAAGGAAAAAGATTGCAAGAGGTGCAGCTAAAGGGCTTTGTTTCCTGCACCACAATTGCATCCCTCACATCATACACAGAGATATGAAGTCAAGCAATGTGCTACTTGACCATGAAATGGAGTCCAGGGTCTCAGATTTTGGAATGGCAAGACTTATAAGTGCCCTTGATACACATCTTAGCGTGAGCACACTGGCAGGAACACCAGGATATGTTCCCCCAGAGTACTACCAAAGCTTCCGGTGCACTGCCAAGGGAGATGTCTACTCATTTGGGGTTGTGATGTTGGAACTGCTTAGTGGTAAACGCCCTACTGACAAGGAGGATTTCGGTGACACCAACTTGGTTGGGTGGGCCAAGATGAAGGTCCGTGAAGGGAAGCAAATGGAAGTAATTGACTCGGACTTGCTTTTGGCCACTCAAGGAACTGATGAGGCAGAAGCCAAAGAAGTGAAGGAGATGATAAGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCTATGCTGAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA 3399 0.4395 MENNHVQLLPHLTVTLLVITVLFPVTECAAVSSIKTDAQALLMFKRMIQNDQGGVLSGWKLNKNPCSWYGVSCTLGRVTQLDISGNNNLAGTISLDALSSLDMLSLLKLSLNSFSVNSTSLLRLPYGLTQLDLSFGGVTGPVPENLFSKCPNLVVVNLSYNNLTGPIPENFLQNSGKLQTLDLSSNNLSGSIFGLKMDCISLLQLDLSGNRLSDSIPLSLSNCTSLKSLNLANNMISGEIPKALGQLNKLQTLDLSHNQLTGWIPSELGNACASLLEVKLSFNNISGSIPSGFSSCTWLQLLDISNNNLSGQLAGSIFQNLGSLQELRLGNNAITGQFPSSISSCKNLRIADFSSNKIYGSIPRDLCPGAASLEELRMPDNLIIGEIPAELSKCSQLKTLDFSLNYLNGTIPDELGQLENLEQLIAWFNGLEGKIPPKLGQCKNLKDLILNNNHLTGGIPIELFNCRNLEWISLTSNELSGEIPREFGLLTRLAVLQLGNNSLTGEIPAELANCSSLVWLDLNSNKLTGEIPSRLGRQQGAKSLFGILSGNTLVFVRNIGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFARLYSGPVLSLFTKYQTLEYLDLSYNELRGKIPDEFGDMVALQVLELSHNQLSGEIPSTFGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSHNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKSENSQPTTNPTDDAGKGGHKTATATWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDSDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02144 1132 FunFam serine/threonine-protein kinase BRI1-like 2 911 1128 - -
Phco4g02144 1132 Gene3D Ribonuclease Inhibitor 75 723 IPR032675 -
Phco4g02144 1132 CDD STKc_IRAK 841 1120 - -
Phco4g02144 1132 ProSiteProfiles Leucine-rich repeat profile. 249 270 IPR001611 GO:0005515
Phco4g02144 1132 MobiDBLite consensus disorder prediction 722 743 - -
Phco4g02144 1132 Gene3D Phosphorylase Kinase; domain 1 795 910 - -
Phco4g02144 1132 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 280 1119 - -
Phco4g02144 1132 Gene3D - 548 604 - -
Phco4g02144 1132 FunFam serine/threonine-protein kinase BRI1-like 2 36 148 - -
Phco4g02144 1132 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Phco4g02144 1132 SUPERFAMILY RNI-like 240 539 - -
Phco4g02144 1132 Gene3D Transferase(Phosphotransferase) domain 1 911 1129 - -
Phco4g02144 1132 ProSiteProfiles Leucine-rich repeat profile. 201 222 IPR001611 GO:0005515
Phco4g02144 1132 ProSiteProfiles Protein kinase domain profile. 835 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02144 1132 PRINTS Leucine-rich repeat signature 247 260 - -
Phco4g02144 1132 PRINTS Leucine-rich repeat signature 178 191 - -
Phco4g02144 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Phco4g02144 1132 FunFam LRR receptor-like serine/threonine-protein kinase 196 271 - -
Phco4g02144 1132 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 601 723 - -
Phco4g02144 1132 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 368 555 - -
Phco4g02144 1132 Pfam Leucine rich repeat 202 260 IPR001611 GO:0005515
Phco4g02144 1132 Pfam Leucine rich repeat 128 188 IPR001611 GO:0005515
Phco4g02144 1132 Pfam Leucine rich repeat 467 527 IPR001611 GO:0005515
Phco4g02144 1132 Pfam Leucine rich repeat 602 643 IPR001611 GO:0005515
Phco4g02144 1132 ProSitePatterns Protein kinases ATP-binding region signature. 841 864 IPR017441 GO:0005524
Phco4g02144 1132 Pfam BspA type Leucine rich repeat region (6 copies) 288 382 IPR026906 -
Phco4g02144 1132 SUPERFAMILY L domain-like 573 719 - -
Phco4g02144 1132 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 272 362 - -
Phco4g02144 1132 SMART serkin_6 835 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02144 1132 SUPERFAMILY Protein kinase-like (PK-like) 816 1117 IPR011009 -
Phco4g02144 1132 FunFam serine/threonine-protein kinase BRI1-like 2 796 910 - -
Phco4g02144 1132 MobiDBLite consensus disorder prediction 724 738 - -
Phco4g02144 1132 SMART LRR_typ_2 199 223 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 247 271 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 515 538 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 418 442 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 321 345 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 150 174 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 630 653 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 654 677 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 443 466 IPR003591 -
Phco4g02144 1132 SMART LRR_typ_2 490 514 IPR003591 -
Phco4g02144 1132 SUPERFAMILY L domain-like 36 311 - -
Phco4g02144 1132 Pfam Brassinosteroid receptor island domain 545 603 IPR045381 -
Phco4g02144 1132 Pfam Protein tyrosine and serine/threonine kinase 838 1116 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02144 Phco-Chr4 41981507 41984905 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Phco4g02144 PK_Tyr_Ser-Thr 1.6e-43 CL0016