Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02128 ATGGGGCGTGGAAGGATACCTATGGATCTCATTGAAAAAGAGAAGGCTCGAAAGACAACATTTCAAAAGAGAAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCGACTCTTTGTTCAGTGGATGTTGGTGTAATTATCTTTGCATCAAAGTTTCTTGATGAACCTGAAATATGGCCACAAGATCCAAGAGAGTTAAAAAATGTCATTCAGAAATATCTGAACACCACCAGTGATAGGCGTCCGAAGGTGTATGATGTGGAAGAGTATTTCAGTGAAAGGATGAAAAGAATTGAAGGTGATATTTCCAAAGTGCAAAAAGGGAAGATCCAACTCATGTACCCAACCTGGGATGAATCTTACAATGCTCTTGGAGAGGAACAGTTGAGGATGTTTATTAGCATTCTGGATGCTAAGCTTGATGTTTGTACTCAAAGGATGAATATGTTGAAGCAAGATTCAAACGGGAGAGCAATAGTAGAATTAGTCAAAGATGAAGCAGGTGTTCCCTACGTGGCCCCAAATTTAGGTAGTCACCTCAATTTCATGCAGAACATGTCTCAGACACAGATTTTCCCTCCTAATGATAACAGCCAAGTACCATTTTATCCATTTCATCTAAGCCAAAGTTCTGTACCTTCTTTGTTTCAATTGGGCCAAAACTTTAGGCAATTGATGGAAAAAAATGGAACTGTGGATTGGGGTAATCAAGTTGGTGCAAGTGATCACAGAATGGGTACACAACAGGAGAATGGATCAGACAAAAACCAAAACTCCTCATCATGTTATTACAATGGAAATATGCAAACAATGCAGGCATATAATAATGCTGCTTTGCAAACTCTTCCTTCTCAATTGCAGTTCGATGCAACATTCCAGACCCTGTCAAATCGACCAGGTCCACCACAGGGATTTGACCCTAATGGCTATGATGATTCAAATATGCTTCAACCTCATTTTTTAAACTATATGCACAGAAGGAAGTAG 987 0.3911 MGRGRIPMDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPEIWPQDPRELKNVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGDISKVQKGKIQLMYPTWDESYNALGEEQLRMFISILDAKLDVCTQRMNMLKQDSNGRAIVELVKDEAGVPYVAPNLGSHLNFMQNMSQTQIFPPNDNSQVPFYPFHLSQSSVPSLFQLGQNFRQLMEKNGTVDWGNQVGASDHRMGTQQENGSDKNQNSSSCYYNGNMQTMQAYNNAALQTLPSQLQFDATFQTLSNRPGPPQGFDPNGYDDSNMLQPHFLNYMHRRK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02128 328 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Phco4g02128 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Phco4g02128 328 CDD MADS 2 51 - -
Phco4g02128 328 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Phco4g02128 328 MobiDBLite consensus disorder prediction 294 314 - -
Phco4g02128 328 MobiDBLite consensus disorder prediction 235 263 - -
Phco4g02128 328 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Phco4g02128 328 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Phco4g02128 328 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco4g02128 328 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco4g02128 328 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco4g02128 328 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02128 Phco-Chr4 41789336 41790322 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco4g02128 SRF-TF 1.1e-18 No_clan