Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02078 ATGGGAAGATATGAAATGGGTAAGGTCTTGGGCGAAGGAAACTGCTCACTCGTCAGACTTGCACGTAACCTTGTCACCGGAGACAAGGTAGCCATCAAAATTTTTGACAAAGAACAACTTCTCAAAAAGAAAAGGATCAAGAAGCTAATTAAGAAAAAGATTAAACAAGAAATATCAATACAGAACATGGTTAAGCACCCGAATGTGGTGCCTGTAATTGAGGTTATGGCTACCAAGAAAAATATATACATCGTAATGGAGCATTTAGCCCAAGGGGAACTGCTTGATAAAATCAGTAAGAGAACCCTCATGGGAATGAGTGAACTCCAAGCAAAGAATTATTTTCACCAGCTTATACGTGCTTTGGATTACTGTCATAGTAAAGGTGTTTTCCATAGAGACATAAAGCCGGAGAATTTGTTGGTGGGTGATGATGGAGTGCTCAAGTTATCAGATTTTGGATTGAGTGAACAATTCCCAGCTGATGGAAATCGGCTTTTTTGTGTCCCATATGGCACGCCACAATATACCGCCCCGGAGGTGACAAGATCCTACGGCTATGAGGGTCCAAAGGCTGATATTTGGGCATCTGGTGTTACACTTTTCTTTATGGTTTCTGGTCATTTGCCCTTCACCAGTGATAACCAGCATGATTTACATAAAAAGATTTGTGCTGCTGACTACACCCTCCCTTCTTTTTTTTCTAAAGATTTAAAGAGACTGATTGGGAGAATGCTTGATGCCAATCCTGCTACACGGATCACAATTGATGAGATTTTTCAGGATGAGTGGTTCATGAGCAATTATCAACCTCTTACATTTCCCCGGGAAATTCTTATTTTTGATAATGTAAGTGCTAGTTTCAGTGGAATAGCTGATTCACGAATTCTTCCAGTGGAGGGCGAAGGATCAGAGTCTTCAGCAGCACCACAGGCCATGAATGCGTTTGAGATGTTTTCTACCTGTCTCGGCTTCAACCTTATAGGAAATCTTTTCAGTGAGGTACATGTTAAGTGGGAAGTTAGATTCATATCCAAATCTCCCATCCTTGATATAATTGGAGAAATTGAGTATAAAACATCGAGATTAGGATTTGAAGTTAAGAGGAGGAACTTTCAGATGAGTATTACTCATAAAGAGGAACTGGCTAGACGCAGAGGTCACCTATCTATAGTCATTAAGATCTATGAGATGGTCCCTTCCTTTTACATGGTTGAGGTTCGTAATGCTTCAGGAGATAATCTACAATTCCATGAGTTCTGCAAGCAAGTATTTGCTGAGCTGCAAAATATCCTTTGGAAAGTAGAACCTTTACACGTAAAAGATGGTATTGCATTTGGACTTCTAATGTTTTGTCTGTCTCATTGCGCAGAACTCCATCATGAGTACAGAAGAAGAATCCCCTTAGTGGTGTGA 1416 0.4025 MGRYEMGKVLGEGNCSLVRLARNLVTGDKVAIKIFDKEQLLKKKRIKKLIKKKIKQEISIQNMVKHPNVVPVIEVMATKKNIYIVMEHLAQGELLDKISKRTLMGMSELQAKNYFHQLIRALDYCHSKGVFHRDIKPENLLVGDDGVLKLSDFGLSEQFPADGNRLFCVPYGTPQYTAPEVTRSYGYEGPKADIWASGVTLFFMVSGHLPFTSDNQHDLHKKICAADYTLPSFFSKDLKRLIGRMLDANPATRITIDEIFQDEWFMSNYQPLTFPREILIFDNVSASFSGIADSRILPVEGEGSESSAAPQAMNAFEMFSTCLGFNLIGNLFSEVHVKWEVRFISKSPILDIIGEIEYKTSRLGFEVKRRNFQMSITHKEELARRRGHLSIVIKIYEMVPSFYMVEVRNASGDNLQFHEFCKQVFAELQNILWKVEPLHVKDGIAFGLLMFCLSHCAELHHEYRRRIPLVV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02078 471 CDD STKc_AMPK-like 3 264 - -
Phco4g02078 471 CDD CIPK_C 314 423 - -
Phco4g02078 471 Pfam Protein kinase domain 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02078 471 FunFam Non-specific serine/threonine protein kinase 308 433 - -
Phco4g02078 471 SMART serkin_6 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02078 471 Gene3D Kinase associated domain 1, KA1 308 434 - -
Phco4g02078 471 SUPERFAMILY Protein kinase-like (PK-like) 1 291 IPR011009 -
Phco4g02078 471 FunFam Maternal embryonic leucine zipper kinase 1 280 - -
Phco4g02078 471 Pfam NAF domain 310 368 IPR004041 GO:0007165
Phco4g02078 471 ProSiteProfiles Protein kinase domain profile. 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02078 471 Gene3D Transferase(Phosphotransferase) domain 1 1 287 - -
Phco4g02078 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Phco4g02078 471 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02078 Phco-Chr4 41123120 41126881 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco4g02078 Pkinase 5.1e-67 CL0016