Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02069 ATGAAACTTTCATCAGCAGGTTTTAGTACTCCACCCCAGGAAGGAGAAAAGCGAGTACTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTAGTATATTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAAGTGGATGGCCATATACCCAATTATCCAAGCTTACCACCACAGCTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACGGAGACTGATGAAGTATATGCTCAGATGACTTTACAACCTCTGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCAGAGTTGGGCACTCCTAGTAAACAGCCAACAAACTACTTTTGCAAAATTCTGACTGCCAGTGACACCAGCACTCATGGGGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGAGGTCAGCCCAAAAGGCATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGCGATTCAGTTCTGTTTATCTGGAATGAAAAGAACCAATTGCTTCTTGGCATTCGCCGTGCTAATCGTCCTCAACCTGTGATGCCATCATCAGTCTTATCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACTAATAGTCGTTTCACCATCTTTTATAACCCGCGAGCTAGCCCATCAGAATTTGTCATACCTTTAGCAAAGTATGTTAAAGCCGTATATCATACTCGAGTTTCAGTCGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCCAGTGTTCGTCGATACATGGGCACAATAACTGGCATTAGTGACCTGGATTCTGTTCGGTGGCCAAATTCCCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCCCGGGTGTCTCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTTCCCCTTAGGCTCAAGAGACCATGGCCTCCAGGACTGCCTTCATTCCATGCAGGCTTGAAGGATGATGATTTTGGTATAAATTCTTCACTAATGTGGCTTCGAGACACGGACAGAGGTCTTCCATCTCTTAATTTTCCGGGGGTTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCAATGATGAATTATCAAACAGACGTGTACCAAGCTATGGCTGCTGCTGCACTTCAGGATATGTGGACTTCAGATCCTTCTAAACAACATCCTACTTCCTTACTTCAATTTCAGCAACCACAGAACTTTCTGAATAGGAGTTCTCCCTTAGTGCAGACTCAAATCTTGCAGCAGTCTCAATCTCAGAAGTCTTTTTCAAATAGTCAAGAAATACCACATCCATCTCAATCTCAGGCTCAAACTCATTTTCAGCAGCATTTGCAGCATCAGCACTCATTCAATAATCAGAATCAGCATCATCTTCTACAGCAGCAACAACAGCAGCAACAATCGCAACAACCACAGCAACAACAACAACAACAGCAACTGCAGCAGCAACAAGTGGTTGATCATCAGCACATTTCAAGTTCTGTCTCTACGATGTCTCAGTTTGTTTCAGCACCTCAATCTCAATCGCCACCCATGCAAGCAATCTCTTCACTGGGACATCAGCAAAGTTTTTCTGATTCAAACGGAAACCCTGTGACTAATGCTATTGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTTCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGAACCTCTTGGGTTCCTGTTCAACCTTCAACTGCATGGCCGCCCTCCAAACGTGTTGCAGTGGATCCTCTCTTTTCTTCTGGGGCATCTCAATGTGTTCTGCCTCAAGTGGAGCAGTTAGGGCAACCAGAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGGGAGTGTGCTATAGAAGGAAGCACTGATCCTCAAAATCATCTTTTGTTTGGAGTAAATATAGAGCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAGTTAGCAGTAACAGCGGCCCACCAACTATACCTTTCCAATCATCTAATTACCTGAACACCACAGGCACTGATTCTTCAATGAATCCTGGAATGACACACAATATTGGTGAAGCGGGCTTCCTGCAAACCCCAGAAAATGGAGGGCAAGGAAACCCATCGATCAAGACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTTGGAAGATCATTGGATATCACAAAATTCACCAGCTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTTGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTGTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTTGAGCTTCTTAACTCAGTCCCAATTCAGAGGCTCTCTAGTGGCGTGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATAAGCACTGGGATAACAACTGTGGGTTCTTTAAACTACTGA 2748 0.4531 MKLSSAGFSTPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGLKDDDFGINSSLMWLRDTDRGLPSLNFPGVGVSPWMQPRLDPSMMNYQTDVYQAMAAAALQDMWTSDPSKQHPTSLLQFQQPQNFLNRSSPLVQTQILQQSQSQKSFSNSQEIPHPSQSQAQTHFQQHLQHQHSFNNQNQHHLLQQQQQQQQSQQPQQQQQQQQLQQQQVVDHQHISSSVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHSILGSFSQDETSHLLNLPRTSWVPVQPSTAWPPSKRVAVDPLFSSGASQCVLPQVEQLGQPESTMAQNAITLPPFPSRECAIEGSTDPQNHLLFGVNIEPSSLLMHNGLSSLKGVSSNSGPPTIPFQSSNYLNTTGTDSSMNPGMTHNIGEAGFLQTPENGGQGNPSIKTFVKVYKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSSGVCDDYAGHEDPRSISTGITTVGSLNY 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02069 915 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Phco4g02069 915 SMART B3_2 127 229 IPR003340 GO:0003677
Phco4g02069 915 SUPERFAMILY CAD & PB1 domains 780 858 - -
Phco4g02069 915 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco4g02069 915 ProSiteProfiles PB1 domain profile. 782 866 IPR000270 GO:0005515
Phco4g02069 915 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 871 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco4g02069 915 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Phco4g02069 915 FunFam Auxin response factor 777 871 - -
Phco4g02069 915 MobiDBLite consensus disorder prediction 482 599 - -
Phco4g02069 915 FunFam Auxin response factor 125 229 - -
Phco4g02069 915 FunFam Auxin response factor 291 363 - -
Phco4g02069 915 Gene3D - 125 228 IPR015300 -
Phco4g02069 915 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Phco4g02069 915 Gene3D - 291 363 - -
Phco4g02069 915 CDD B3_DNA 126 227 IPR003340 GO:0003677
Phco4g02069 915 Gene3D - 778 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02069 Phco-Chr4 40976259 40984018 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco4g02069 AUX_IAA 2.8e-06 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02069 4 40976259 40984018 Phco4g02069 4 40976259 40984018 ECH