Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02035 ATGGACATAACATTGCAAGTAAACTTAGAGTTTATACTAGAGCATCTTGTCGTTGGACTGAACCAATGGCTAAAGTTTGAATTGGTTGGGAGATTCAACAATGGAAGAACACCAAATCTAAAAAGAGGAAAGATTGAAATCAAAGAAGTTGAACAGAGAAACAGGTTCACCTTTTTCAATCGCAAGTTAGGGCTTTTCCACAAGCTTACAGAACTTTCTCTTCTATGCAAAGCAGAAACAGCTTTGATCATCACCTCTCAAAACGGCAACGTCTATTCCTGTGGCTACCCCAACACCGACGCCATCCTCCGCCGCTACGTCAACGGAGGGTTGTATCAACATTGCAGCGGTGCAAGCGATAAAGAGCAGGAGAAGTTTCTTGAAAAGCTGAGGCTGGAATATGAGAATGTGCAGGATAAGTTGAAAGAAAAGCAGAAGCTGTTGAAAGAGATGAAAGGGGCAGAAAAGAATAGATCTTCCTTTCCTCCTTGGTGGAATCTCTCCACCCAGGATATGGGTTTGGAGGATCTTGAAGAGTTCAAGACCTCTTTGGAAAGTTTAAAGCTTAACCTCATCACAACATTGTAA 588 0.4201 MDITLQVNLEFILEHLVVGLNQWLKFELVGRFNNGRTPNLKRGKIEIKEVEQRNRFTFFNRKLGLFHKLTELSLLCKAETALIITSQNGNVYSCGYPNTDAILRRYVNGGLYQHCSGASDKEQEKFLEKLRLEYENVQDKLKEKQKLLKEMKGAEKNRSSFPPWWNLSTQDMGLEDLEEFKTSLESLKLNLITTL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02035 195 SMART madsneu2 40 97 IPR002100 GO:0003677|GO:0046983
Phco4g02035 195 SUPERFAMILY SRF-like 41 115 IPR036879 GO:0003677|GO:0046983
Phco4g02035 195 Coils Coil 127 157 - -
Phco4g02035 195 ProSiteProfiles MADS-box domain profile. 40 98 IPR002100 GO:0003677|GO:0046983
Phco4g02035 195 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Phco4g02035 195 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Phco4g02035 195 PANTHER MADS BOX PROTEIN 42 191 - -
Phco4g02035 195 Gene3D - 51 122 IPR036879 GO:0003677|GO:0046983
Phco4g02035 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 51 93 IPR002100 GO:0003677|GO:0046983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco4g02035 SRF-TF 8.6e-12 No_clan