Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02011 ATGATGCGTCTCTCTACAGTTCTTCTAGGACTACCTACTACTCTTTTGACTATGGGTCCTGGCATGGCAATTTTGATAAAGTACGGGGGCCATGAAGTGCAAGCTAGAGCTTCTTTGCTGAGTGATAGTGAAAATCGAATCTTTTGTAGGTTTAGTTTTGGCCCTTCCTTTTTGTTCTGCGTCTTGCGGTTCTCTCCTCTCACACAAGCCTACCTGGAATCAGCTAGAGTTGACACCCACAACCTCTTGGAACTGTTTCTTTTTAACTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCATTTACCTTAACTGGTTTATTAGCAGTGGAATTATGGACACCAAGATGGGGTTTCCAGGTGGTGGTGGGGGTGGGAAGATGTGGCACAAATGGTGGGAGAAGATCTCAGGACAGGGTTGCAAAATCCATCAACAGTACTACCAGTATATTGGCTCTAAGGAAGTGAAGAGAGCGTTGTGGAGGAAGCTTTTGCTGACATGGGTGGTGGGTTGGATTATAGTATCTTTGTGGATCTTGTGCTACTTGAGCTTGCAAGGTATTGAGAAGAGGAAAGAAACTCTGGCTAGCTTGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTTAACGTCAGTATGAACCATATCCAAGCCATGTCAATTCTGATCTCCACCTTTCACCATGCCAAGAACCCCTCAGCCATCGATCAGAAAACTTTTGCAAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAGCAGTTTGAAAAGCAACAAGGTTGGACTATCAAGAGGATGGATACTCTAGAGCAGAACCCGGTTCATAAGGATGATTATGCCCCAGAGGCATTGGAACCATCCCCCGTCCAGGAAGAATATGCTCCTGTAATCTTTGCACAAGATACAATTGCACATGTGATTTCTGTTAATGTGCTTTCTGGAAAGGAAGACCGTGAAAATGTGCTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTGCTCAAAACAAATCGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGAATTCAAGCGACTGATGGGTATCTTGGGGGAGTCTTTGATGTTGAGTCATTGGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTTTATGATACTACAAATCATACTCATCCAATTGCCATGTATGGTTCAAACGAATCAGGGGATGAGTTCTATCGTGTCAGCACTCTTAATTTCGGAGACCCTTTCAGGAAGCACGAGATGCACTGTAGGTTCAAGCAGAAACCACCATGGCCATGGTTGGCAATAACTACTTCATTTGGTATCCTTGTTATTGCATTCCTTGTCGGATATATTTTCCATGCCACTGTGAATCATATCGCCAAAGTAGAAGATGATTGCTGTGTGATGAGGAAACTTCGGGAACGAGCCGTGGCGGCTGATATTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCACGAGATCAGAACACCAATGAACGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTTAGGACAGCCCAGGAAAGCGGAAAGGCTCTGGTGTCACTAATAAACGAGGTTTTGGATCAAGCTAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCTGTGCTCTTTGACATACGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCTCAAGGAAAAGGGGTAGAGTTGGCGGTTTATGTGTCAGATCAGGTTCCAGAATTTCTAATAGGTGATCCAGGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACTGACAAAGGACATATTTTTGTCACTGTCCATCTTGTTGAGGAGATTGTCCATTCAATAGAGGTTGACAAAGAATCCAACTCAGAAAATACTTTGAGCGGCTCTGTCGTAGCTGATAGTCGCCGGAGCTGGGAAGGATTCAGGGCTTTCAGTCAAGAGGGACCTCTTGGTTCCTTTTCATCCCCCTCGAGTGATCTTGTCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGCATTCCTCTTGAATCTCAGCCCCGCATCTTCACACCATTCATGCAGGTAGGTCCATCCATTTCCAGAAAGCATGGAGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGTCTCATGAATGGAGAAATTGGATTTGTGAGCATACCCAAGATTGGATCCACATTCACTTTTACCGCTGTATTCAGCAATGGTCTCCGCAGTTCAAACGAGTGTAAAATTCAGCAAACAAACAGCCAACCTCGGTCGGCATCTTCAGAATTTGAGGGAATGACTGCATTAATTATTGACCCAAGACCTGTTAGAGCAAAAGTGTCAAGATATCACATCCAACGGCTTGGCATTCACGTTGAGATGGTTTCTGATTTAAACCAAGGTTTGCTAACCATAAGCAATGGGAATATAGTTATTAATATGGTCTTGATTGAGCAGGAGGTTTGGGATAGAGATTTAGGCTTTTCATCTCACTTTGTCAATAATACAAGGAAAATTGATCATGGGATTCCCCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCTAGTGTAAACTTGGGTGCCGATAATCCTACTGTCATCACCAAACCTCTGAGAGCAAGTATGCTTGCTGCCTCACTACAGCGAGCCATGGGTATCCAAAACAAGGGAGCTCCTCGAAATAGAGAGCTCCAAAGTTTGTCTCTTCGCCATCTTCTTTGTGGCAGGAAAATTCTAATCGTAGATGACAATGCTGTGAACCGTGCTGTAGCAGCTGGTGCATTGAAAAAGTATGGAGCAGATGTGGTTTGTGTCAGCAGTGGGAAAGATGCCATCGCTTCCCTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGTAGCAACAAAGAAAATTAGGGAGATGGAACAAAGTGCGAACAGAGAAGTATCAATGGATGATAATGTTACAAACTGGCATGTACCCATTTTAGCCATGACTGCAGATGTGATACAGGCTACACATGAGAAATGCCTAGGGGGTGGCATGGATGGATACGTTTCAAAACCATTTGAAGCTGAACAGCTCTATAGAGAAGTCTCACGGTTTTTCCAGTCATATTGA 3375 0.435 MMRLSTVLLGLPTTLLTMGPGMAILIKYGGHEVQARASLLSDSENRIFCRFSFGPSFLFCVLRFSPLTQAYLESARVDTHNLLELFLFNLCWLLLWMSLLHVVGFGLKVGHLLLVLCCWVVSVIYLNWFISSGIMDTKMGFPGGGGGGKMWHKWWEKISGQGCKIHQQYYQYIGSKEVKRALWRKLLLTWVVGWIIVSLWILCYLSLQGIEKRKETLASLCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSNESGDEFYRVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSFGILVIAFLVGYIFHATVNHIAKVEDDCCVMRKLRERAVAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPEFLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLVEEIVHSIEVDKESNSENTLSGSVVADSRRSWEGFRAFSQEGPLGSFSSPSSDLVNLIVSVEDTGEGIPLESQPRIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVFSNGLRSSNECKIQQTNSQPRSASSEFEGMTALIIDPRPVRAKVSRYHIQRLGIHVEMVSDLNQGLLTISNGNIVINMVLIEQEVWDRDLGFSSHFVNNTRKIDHGIPPKLFILVNSSSSFKASVNLGADNPTVITKPLRASMLAASLQRAMGIQNKGAPRNRELQSLSLRHLLCGRKILIVDDNAVNRAVAAGALKKYGADVVCVSSGKDAIASLKPPHQFDACFMDIQMPEMDGFVATKKIREMEQSANREVSMDDNVTNWHVPILAMTADVIQATHEKCLGGGMDGYVSKPFEAEQLYREVSRFFQSY 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02011 1124 Pfam Response regulator receiver domain 992 1116 IPR001789 GO:0000160
Phco4g02011 1124 ProSiteProfiles Histidine kinase domain profile. 548 816 IPR005467 -
Phco4g02011 1124 SMART HisKA_10 541 606 IPR003661 GO:0000155|GO:0007165
Phco4g02011 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 595 811 IPR036890 -
Phco4g02011 1124 CDD REC_hyHK_CKI1_RcsC-like 992 1117 - -
Phco4g02011 1124 Gene3D - 605 816 IPR036890 -
Phco4g02011 1124 SMART HKATPase_4 653 816 IPR003594 -
Phco4g02011 1124 CDD HATPase_EvgS-ArcB-TorS-like 658 814 - -
Phco4g02011 1124 PRINTS Bacterial sensor protein C-terminal signature 741 755 IPR004358 GO:0016310|GO:0016772
Phco4g02011 1124 PRINTS Bacterial sensor protein C-terminal signature 776 794 IPR004358 GO:0016310|GO:0016772
Phco4g02011 1124 PRINTS Bacterial sensor protein C-terminal signature 759 769 IPR004358 GO:0016310|GO:0016772
Phco4g02011 1124 FunFam Histidine kinase 4 258 487 - -
Phco4g02011 1124 ProSiteProfiles Response regulatory domain profile. 991 1121 IPR001789 GO:0000160
Phco4g02011 1124 SUPERFAMILY CheY-like 989 1121 IPR011006 -
Phco4g02011 1124 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 528 607 IPR036097 GO:0000155|GO:0007165
Phco4g02011 1124 CDD PRTases_typeI 939 1019 IPR000836 -
Phco4g02011 1124 ProSiteProfiles Response regulatory domain profile. 844 965 IPR001789 GO:0000160
Phco4g02011 1124 FunFam Histidine kinase 4 513 604 - -
Phco4g02011 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 653 814 IPR003594 -
Phco4g02011 1124 Pfam His Kinase A (phospho-acceptor) domain 541 604 IPR003661 GO:0000155|GO:0007165
Phco4g02011 1124 ProSiteProfiles CHASE domain profile. 254 480 IPR006189 -
Phco4g02011 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 198 1114 - -
Phco4g02011 1124 SMART CHASE_2 254 455 IPR006189 -
Phco4g02011 1124 Gene3D - 206 257 - -
Phco4g02011 1124 SMART REC_2 990 1117 IPR001789 GO:0000160
Phco4g02011 1124 Gene3D - 986 1123 - -
Phco4g02011 1124 Gene3D - 512 604 - -
Phco4g02011 1124 SUPERFAMILY CheY-like 840 966 IPR011006 -
Phco4g02011 1124 CDD HisKA 541 602 IPR003661 GO:0000155|GO:0007165
Phco4g02011 1124 Gene3D CHASE domain 258 487 IPR042240 -
Phco4g02011 1124 Pfam CHASE domain 257 453 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02011 Phco-Chr4 39943699 39951379 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco4g02011 CHASE 2.1e-36 CL0165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02011 4 39943699 39951379 Phco4g02011 4 39943699 39951379 ECH