Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02008 ATGTTGAGAAAAGCACGTTTGGTTAACCTTAACCTTAATCACAACCTCAAATCCATAGTAAGTTTCAACCAGCACCAACTGTGTGTCTCCACTTTCTGCTTCTTCAACTTCCTTTCTCGATCCATCTTTTGGAACCAACTCGCGCGTGCGTTGTTGACCTCACCGCACCGAACCAAATCTAGAAGCCTCTCCGGTTCAAAAAAATGCTCGGTGTTCCCTTCCACTTCTAGCTTTTCATTCCTCTGGTTCAATACCATGACACCTGGTTACGAATACGATATTAATGATCTGCATCAAGAAGCTCAAGCCAGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCTGCTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCTTGTTTCTGTTTAACAAAAGAGTCTTACGTTTCTTCCGGAAAGATGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGGCTGAAGGTTGGAAATGTTGAAGCCTTAAATTGTTATTATGCACGCGGAGAGCAGAACCCTAGTTTCCAGAGGCGGAGCTATTGGATGTTGGATACGGAATATGAGCATATTGTTCTTGTGCATTATAGAAACACAAGTGAGGGAAGACTAAGTTCTGGAGCCCGTGCACAATTGTCACCAAGTTCCTCTTCTGCATTTAGTCAGAGTCCTAGCCCATATTCTAATCAGAATCCAGGGTCAACCTCCATACCTGTTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGAACTACAGAAGTTACGTCTGATATATTAATTCTGAACAATAAAATGGATCACATGGATGGAACCGATGCAGAATCAGGAACCTCATCTGAGCTTGAAGTTACTCAAGCTTTGCGCCGACTAGAGGTACAATTAAGTTTGAATGAGGACAGCTTTGAAGATATTGCTCCCTTCTGCAATAAGCACGAAGCTACCCACGACCTAAACCCTCTGCACAATCAAAGGGTGATCAGCAATCAAGAGCAATCTGCAGCTTTCTCTGGATCTGATGATCAAGGGCTATTTTATGATGAATATAAGGGAAGACAAGGTGATGGTGTTGAATGTTATCATGAACTAATAGACCATGGATACCCTGACGGAAATGAAAAGGCTTTATGGACAGGGGTGCTTGAATCATGCAAGTGCTCAACTGCTGTCAAGTTACCACCGAAAAATGTATACATGGCAGCTGGAAATCAGGAAAATTCAGTGTCTTTTCCTGGAAGGGTACTACCAATTTCCAACCAGGAAGACAGTCACTGGCTCAACTTCGACAGTGATAATTCTCAAAGCTCTGTTTTCACACCTCCTCAAGGGGTGGATGAAGTCAAATTTCCTGCATATTCTTCTATGGTGGAAACACGAGTAACTAATTCTGACTACTTTGGAACATTGTTTGACCAAAGCCAAATAGTAGCACCTCTAGATGCAGATTCAAGCTTGACCATTGCACACAAACAGAAATTTACTATTAAGACATTCTCCCCAGAATGGGGTTATGCCACCGAGACCACTAAGGTCATCATTGTTGGGTCTTTTCTCTGTCATCCGTCAGATTCTACCTGGGCATGCATGCTTGGTGATGTTGAAGTTCCTGTTCAGATAATTCATGATGGTGTAATCTGTTTTGAAGCTCCACCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAATCCTGCAGTGAAGTCCGAGAGTTTGAATATCGTGATAAGACCTATAGTTGCACCCAATGTACTCAATTGAAAACAGAAGCCACTAGAAGTCCTGAACAGCTGTTATTACTTGTTAGATTAGGGCAGATGCTTCTTTCTACATCAACAATAAAGAATGACAACATAGAATTGGAAATTCCTCTCATAAAACAGAAAGCTGATGATGACTCATGGAGCCATATTATAGAGACTCTTCTAGTTGGCGGTGGAACGTCGACTAGTACTACTGATTGGCTTCTAGAAGAGCTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTACAGATCTCAGGAAAGAGATGAAGAGACAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGCATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCTTTGAACCCTATTCTTAGTTGTGGAGTGAATATAAATTTCCGTGACATCAGTGGGTGGACTGCCCTTCATTGGGCTGCCCGTTTCGGAAGGGAAAGAATGGTTGCTTCACTTGTAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAACTGCACAAGACCCAATCGGTAAAACTGCTGCATCTATTGCAGCCAGCAATGGGAACAAGGGACTAGCAGGATATCTTTCAGAGGTAGCTGTGACAAGCCACCTATCATCACTTGTACTGGAAGAGAGTGAATTATCTAAAAGTTCTGCCCAGCTTCAGGCAGATATGACTGTTACCAGTGTCTCCAAGGAAAATCTTGCTGCCAATGAGGATCAGGCGTCACTCAAACATACCTTGGCTGCTGTCAGAAATATAACTCAGGCAGCTGCGCGGATACAATCTGCTTTTCGGTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGGTATAGATAGGTTTGGTACGAGTGTAGGTGGCATTGGTAGCATTCCAGAAATTTCTGCTATGTCAAAACTTGCCTTTCGAAGCTCACGCGAACATAATTCAGCTGCTTTATCTATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAAAGATTTCTTATCATTGCGCCAAAAAGTAGTGAGGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCTTGGACAAGGTCGTGCTACGATGGAGAAGGAAAGGAGCTGGTTTACGGGCTTTCCGACCAGAGATGGACATTAATGAAAATGATGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAGGTGGATGTAGAAATTGAAAAGGCTGTTTCACGGGTGATGTCCATGGTCGACTCACCAGATGCTCGTGACCAATATCGTCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGTGGCCGGTACGAGTGACGAAGTATCATCAACCACATCTGTGGGGAATGCCTTATTTATGGAAGATGACTTGTATCCATATCTCTAG 3219 0.4355 MLRKARLVNLNLNHNLKSIVSFNQHQLCVSTFCFFNFLSRSIFWNQLARALLTSPHRTKSRSLSGSKKCSVFPSTSSFSFLWFNTMTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFLLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYARGEQNPSFQRRSYWMLDTEYEHIVLVHYRNTSEGRLSSGARAQLSPSSSSAFSQSPSPYSNQNPGSTSIPVDSYEPNQSFSSPGTTEVTSDILILNNKMDHMDGTDAESGTSSELEVTQALRRLEVQLSLNEDSFEDIAPFCNKHEATHDLNPLHNQRVISNQEQSAAFSGSDDQGLFYDEYKGRQGDGVECYHELIDHGYPDGNEKALWTGVLESCKCSTAVKLPPKNVYMAAGNQENSVSFPGRVLPISNQEDSHWLNFDSDNSQSSVFTPPQGVDEVKFPAYSSMVETRVTNSDYFGTLFDQSQIVAPLDADSSLTIAHKQKFTIKTFSPEWGYATETTKVIIVGSFLCHPSDSTWACMLGDVEVPVQIIHDGVICFEAPPHLPGKVTLCITSGNRESCSEVREFEYRDKTYSCTQCTQLKTEATRSPEQLLLLVRLGQMLLSTSTIKNDNIELEIPLIKQKADDDSWSHIIETLLVGGGTSTSTTDWLLEELLKDKLQQWLSYRSQERDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDISGWTALHWAARFGRERMVASLVASGASAGAVTDPTAQDPIGKTAASIAASNGNKGLAGYLSEVAVTSHLSSLVLEESELSKSSAQLQADMTVTSVSKENLAANEDQASLKHTLAAVRNITQAAARIQSAFRSHSFRKRRAREGIDRFGTSVGGIGSIPEISAMSKLAFRSSREHNSAALSIQKKYRGWKGRKDFLSLRQKVVRIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRAFRPEMDINENDDEDEDILKVFRKQKVDVEIEKAVSRVMSMVDSPDARDQYRRMLEKYRQAKAELVAGTSDEVSSTTSVGNALFMEDDLYPYL 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02008 1072 SMART CG_1_2 97 215 IPR005559 GO:0003677
Phco4g02008 1072 SMART ANK_2a 739 768 IPR002110 GO:0005515
Phco4g02008 1072 SMART ANK_2a 778 807 IPR002110 GO:0005515
Phco4g02008 1072 Pfam IQ calmodulin-binding motif 937 956 IPR000048 GO:0005515
Phco4g02008 1072 Pfam IQ calmodulin-binding motif 914 932 IPR000048 GO:0005515
Phco4g02008 1072 Pfam CG-1 domain 100 213 IPR005559 GO:0003677
Phco4g02008 1072 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 93 1043 - -
Phco4g02008 1072 ProSiteProfiles IQ motif profile. 935 960 IPR000048 GO:0005515
Phco4g02008 1072 Gene3D - 624 804 IPR036770 -
Phco4g02008 1072 MobiDBLite consensus disorder prediction 220 270 - -
Phco4g02008 1072 FunFam Calmodulin-binding transcription activator 4 isoform A 620 804 - -
Phco4g02008 1072 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Phco4g02008 1072 CDD IPT 510 595 - -
Phco4g02008 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 900 958 IPR027417 -
Phco4g02008 1072 Gene3D Immunoglobulins 504 598 IPR013783 -
Phco4g02008 1072 FunFam Calmodulin-binding transcription activator 2 911 959 - -
Phco4g02008 1072 Pfam Ankyrin repeats (many copies) 741 798 IPR002110 GO:0005515
Phco4g02008 1072 Pfam IPT/TIG domain 510 593 IPR002909 -
Phco4g02008 1072 ProSiteProfiles IQ motif profile. 912 941 IPR000048 GO:0005515
Phco4g02008 1072 ProSiteProfiles IQ motif profile. 857 884 IPR000048 GO:0005515
Phco4g02008 1072 Gene3D - 911 960 - -
Phco4g02008 1072 SMART iq_5 934 956 IPR000048 GO:0005515
Phco4g02008 1072 SMART iq_5 856 878 IPR000048 GO:0005515
Phco4g02008 1072 SMART iq_5 911 933 IPR000048 GO:0005515
Phco4g02008 1072 ProSiteProfiles Ankyrin repeat region circular profile. 739 765 - -
Phco4g02008 1072 SUPERFAMILY E set domains 510 594 IPR014756 -
Phco4g02008 1072 SUPERFAMILY Ankyrin repeat 707 801 IPR036770 -
Phco4g02008 1072 ProSiteProfiles CG-1 DNA-binding domain profile. 94 220 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02008 Phco-Chr4 39870389 39879511 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phco4g02008 CG-1 2.1e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02008 4 39870389 39879511 Phco4g02008 4 39870389 39879511 ECH
Phco2g02992 2 58673218 58683217 Phco4g02008 4 39870389 39879511 PCT