Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02003 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCACCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAGGAGTATTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTTAGCAGCAAAGAGCTGGAATCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACGCAGTTCATGCTGGATCAGCTCTCTGATCTTCAGCGTAAGGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGCAGTTGGAAGGTTATCAAATAAATCCACTCCAACTGAATCCTGGAGTTGAAGAGATGGGATATGGCAGGCATCCAGGTCAAGCTCAGGGTGACGCACTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGTCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 735 0.4694 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEEMGYGRHPGQAQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02003 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phco4g02003 244 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Phco4g02003 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco4g02003 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco4g02003 244 Coils Coil 128 148 - -
Phco4g02003 244 ProSiteProfiles K-box domain profile. 91 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g02003 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco4g02003 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco4g02003 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco4g02003 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Phco4g02003 244 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Phco4g02003 244 FunFam MADS-box transcription factor 7 13 100 - -
Phco4g02003 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco4g02003 244 Coils Coil 154 174 - -
Phco4g02003 244 Pfam K-box region 93 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g02003 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02003 Phco-Chr4 39783839 39790972 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco4g02003 K-box 2.1e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02003 4 39783839 39790972 Phco4g02003 4 39783839 39790972 ECH
Phco2g02997 2 58694724 58699069 Phco4g02003 4 39783839 39790972 PCT