Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01992 ATGGAAGAGAGAAATGATAATGGTGAGAAGCTGGATGAGGTTATGCTACCAGGTTTTAGGTTTCATCCAACAGACGAAGAGCTTGTTGGATTTTACCTTAAGAGAAAGATTCAGCAGAGTCCTCTTTCTATTGAGCTCATCAAGCAGCTTGATATCTACAAGTATGATCCTTGGGATCTTCCAAAGTTGGCCACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAGGCCACAGGGACGGATCGCCCTATATATTCCTCGGAGGGTTCCAAGTGTATTGGTCTGAAGAAGTCCCTTGTGTTCTACAAAGGTAGAGCTGCCAAAGGGATTAAAACTGATTGGATGATGCATGAGTTTAGACTACCATCTCTCACTAACCCATCCTCATCCCCTAAGAAGTTAATGGACAAGACCATTCCTGCTAACGAATCCTGGGCAATCTGCAGAATCTTCAAGAAAACCAATGCTACAGCACAAAGAGCTCTCTCTCACTCTTGGGTCTCACCCTTACCTGAAACCACCACTTCAGATCATACGTTAGGCACTGATAGATATGGCAATCAATTTTCTACAGTAAACATGTTATTCCCAAAGAAAACTAGCCTAGCCAGCCAGTTTTGTACTTTCAATCACAATGACACACAACACTCAACCACTACTAGTAGCACCCCTTGTCCTATAGATATTCTGTCTTCTTATAACAAACCAATTATTAATCCATTAATACTTTACAAGCCCTTAGATCTGTTACCCATTTCAAATGGAGACCTTAGCACTGGCTTATTATTCTCAGGTCCTCTTGAAACTTCAACAAACAGTGCTAAATCTTCGATGGATGTCTCTTCATTGCTAATGAGTACCTCAACTTCTGTGCTTGGGGAATTTAGTAGTAAGACCTCTGAGGGAATGAGCACAAACTTTGGTGGGTTACAGGAGCAGAGTAACGGCTACCAAATACCACTACTACGTGAAATGCAAGGGAGCTTTGGCAACCACGATGACAATGTATTGGTAAAGATTCCTAATGTGGATGTGGCTCGTGTTGGTGAGCAACAATCGGAGACAGTGCGATCCATTGGGTTTCCATTCAGTATTGGCGATGCATGGAAGCCAAATGTGCTTTGGGATACTTCATCTTTGTCCTTGTGA 1212 0.4315 MEERNDNGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQSPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTNPSSSPKKLMDKTIPANESWAICRIFKKTNATAQRALSHSWVSPLPETTTSDHTLGTDRYGNQFSTVNMLFPKKTSLASQFCTFNHNDTQHSTTTSSTPCPIDILSSYNKPIINPLILYKPLDLLPISNGDLSTGLLFSGPLETSTNSAKSSMDVSSLLMSTSTSVLGEFSSKTSEGMSTNFGGLQEQSNGYQIPLLREMQGSFGNHDDNVLVKIPNVDVARVGEQQSETVRSIGFPFSIGDAWKPNVLWDTSSLSL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01992 403 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 249 - -
Phco4g01992 403 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Phco4g01992 403 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Phco4g01992 403 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
Phco4g01992 403 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Phco4g01992 403 FunFam NAC domain-containing protein 35 24 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01992 Phco-Chr4 39553337 39554891 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco4g01992 NAM 1.2e-36 No_clan