Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01980 ATGGACCTGACCTCCAGCAGTACCCACACAGTACAAACCTTGGATGCAGATACTAAGATCACACCACCCATCAACCCCACCAACAATACCACCCCAAAGTCTCTATCTTTCACCAACGGCATACCCAAGCGCCACCCCACCACCATCGGTGCTCCACTGCCACAACCACCGCCCATGGTGGTTACCTACAAAGAATGCCTCAAAAACCATGCCGCCAGCCTAGGTGGCCATGCACTCGATGGCTGTGGCGAGTTCATGCCTTCCTCCTCAACCAACCCCACCGATCCTCGCTCCCTTAAGTGTGCCGCGTGTGGCTGCCATCGCAACTTCCACCGCCGTGATCCTCAAGAACATAACAACCTCAACTACAACATTCACAGCACCAACACCGCCGCCGCCACAAACAATAACCCCACTTTTCTAAGCTGCATCTACACCCCTTCAGCACCAGCACCAATCTCTCAGCGAGCCATGAGCCAAAGCACGAGTCCGAGCCTGAGTTCGAGCCCGAGCCACAGTCCGAGCCCAATGTCAAGCCCCTCACCTCCTCCACTCTCCCACGTGCCACCGTACCACGCTTCAGCACCCCACATGCTTTTAGCCCTCGGCACTGGCTATTCTACACCCTCCGATGAACATCACCACCACAGAGGCCTCACCTTTTCGAGCGTGATGTTAAAGAGCGAGAATCCGAAGAAAAGGTACAGGACCAAGTTCAGCAAAGAGCAGAAGGAGAAGATGCATAGCTTCTCTGAGAAACTGGGATGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGCAATTCTGCAATGACATTGGGGTCTCTAGAGGGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCTTAAGGAGAAGATTGGATCAAGGGGAAAATGCAAATCCGAACGCAAATGCAAATTCTTCTCAAAGTGTTGGGGATCATGATGACGGCAATAATACCAGTGGTGGAGTTGGTTTTGACAGTGATATCAACAACCCCTACAATCCCAATAGCAACAACAACAATGACATTCACATGAATGAAGAAGATGATGGATGTCGAAATGTTCATGTTTCTCTTAATGGGTTGTCATCTTAG 1104 0.5091 MDLTSSSTHTVQTLDADTKITPPINPTNNTTPKSLSFTNGIPKRHPTTIGAPLPQPPPMVVTYKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHNNLNYNIHSTNTAAATNNNPTFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTGYSTPSDEHHHHRGLTFSSVMLKSENPKKRYRTKFSKEQKEKMHSFSEKLGWRMQKGDDGLVQQFCNDIGVSRGVFKVWMHNNKNTLRRRLDQGENANPNANANSSQSVGDHDDGNNTSGGVGFDSDINNPYNPNSNNNNDIHMNEEDDGCRNVHVSLNGLSS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01980 367 SUPERFAMILY Homeodomain-like 227 293 IPR009057 -
Phco4g01980 367 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Phco4g01980 367 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 291 - -
Phco4g01980 367 Gene3D - 223 292 - -
Phco4g01980 367 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Phco4g01980 367 MobiDBLite consensus disorder prediction 298 345 - -
Phco4g01980 367 FunFam Zinc-finger homeodomain protein 2 220 293 - -
Phco4g01980 367 MobiDBLite consensus disorder prediction 175 190 - -
Phco4g01980 367 MobiDBLite consensus disorder prediction 153 174 - -
Phco4g01980 367 MobiDBLite consensus disorder prediction 298 352 - -
Phco4g01980 367 NCBIfam homeobox domain, ZF-HD class 232 289 IPR006455 -
Phco4g01980 367 MobiDBLite consensus disorder prediction 153 192 - -
Phco4g01980 367 MobiDBLite consensus disorder prediction 1 38 - -
Phco4g01980 367 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 114 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01980 Phco-Chr4 39468517 39469620 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco4g01980 ZF-HD_dimer 3.4e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01980 4 39468517 39469620 Phco4g01980 4 39468517 39469620 ECH