Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01977 ATGGATGAGATGAGAGAGGAAGAGCTTCAGCTTATGGCATATATTCCGCCAACATATCCCCACTTATGCTTCCTTATATGTAACACTACCATAAAAAGCAAAATGGATCTGCAAAATGTGCAAACTCAAAGCATGCGTTTGGTTCTGTCTACTGATGCCAAACCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGGTTCACTGAGGCTATTAATCAACTTGGAGGTGCAGAAAAGGCAACTCCAAAGAGCCTTATGAGAGTGATGGGGATTCCAGGTCTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGGCTTGGGAAAAGCCCACCGCTAGAAACCTGCTCTGACAACAACCAACAAGGTTTCAGTGAAATCCAGAGCAGTGATGGTCATTGCAGCGCGGAAATCAGTACTGGGACCCAGAATCAGATGAATGAAAGCTTGAAGATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAGGAAACTTTATGAACAAATTGAGGTCCAAAGACATTTGCAGCTTCGAATTGAGGCTCAAGGGAAGTACTTACAATCAGTCCTATCAAAGGCACATGAAACACTTGCAAGATACAACTCTTCCACAACGGGCATAGAACTTGCCAAATCTGAACTTTCTCAGTTAGTATCAATAATTAACAATGCATGTCCGACCTCTCCCATTTCAGAACTGACGGAAACAAGAGGGCTCAGTTTGAACTGTGGAGACAGGAAACAAGACAGAGGAACCATGTGCTCACTTGAAAGTTCTTTGACATCATCTGAAAGCTCTGGGAGAACAGAAGAAACACAACAACTAGATGAGGCAGAGAAGCCTCAAAAGACTAATGGTATTTCAGTTGAATTGCCATTGATGGAGATTCACTCAGAAGGTACAACATTAAAGGGAGATACAAGTGAAGGGAGAAAGAGAAGTGCAGCAACTGATTGTAATGGTTGCTGTGTTGATCAACCCTGTGTAAAAGGATGTGGCAACAAGTTGAGGAAATGTGAACTGTCAGAAATGCTTGACTTGAACAGCCAATATCAGAGAGACATTGACTCAAGTGTGAAAGAAATAGATTTAAATTGCAGTTCAAGCTTTTGGGGACAGTAA 1128 0.4238 MDEMREEELQLMAYIPPTYPHLCFLICNTTIKSKMDLQNVQTQSMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSPPLETCSDNNQQGFSEIQSSDGHCSAEISTGTQNQMNESLKIAEALQMQMEVQRKLYEQIEVQRHLQLRIEAQGKYLQSVLSKAHETLARYNSSTTGIELAKSELSQLVSIINNACPTSPISELTETRGLSLNCGDRKQDRGTMCSLESSLTSSESSGRTEETQQLDEAEKPQKTNGISVELPLMEIHSEGTTLKGDTSEGRKRSAATDCNGCCVDQPCVKGCGNKLRKCELSEMLDLNSQYQRDIDSSVKEIDLNCSSSFWGQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01977 375 MobiDBLite consensus disorder prediction 253 286 - -
Phco4g01977 375 Pfam MYB-CC type transfactor, LHEQLE motif 152 198 IPR025756 -
Phco4g01977 375 Gene3D - 53 111 - -
Phco4g01977 375 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
Phco4g01977 375 MobiDBLite consensus disorder prediction 255 271 - -
Phco4g01977 375 FunFam Myb family transcription factor 53 111 - -
Phco4g01977 375 Pfam Myb-like DNA-binding domain 56 107 IPR001005 -
Phco4g01977 375 Coils Coil 154 174 - -
Phco4g01977 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 109 IPR006447 GO:0003677
Phco4g01977 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 34 283 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01977 Phco-Chr4 39294546 39296269 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco4g01977 Myb_DNA-binding 1.4e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01977 4 39294546 39296269 Phco4g01977 4 39294546 39296269 ECH