Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01976 ATGTCAGAGGTTAAAGGCTCTGAGATAAAGCTCTTTGGAAGGACAATTTCCCTGCCACACAATGATTCTTCTTCACCTGCATGTCTCGCCTGTCCTTCACCTTCCTCTTCTCCCCCGCAAGTTACCTCTGCAACACCACAACATCAAGAAGACCAGGAACCAATAAGGAAAAAACTTACCTCACTTCAAGACGATGATGCGTCATCACATCAAACCACAGAGGATTTAAAATCTCCCGCTTCAGGCATACTCGATAATCCTAAGTCTCCCTCAGCCGAAACAGAGACATCACTGCAGAAATCTTCTGCAAACGGAGAACAGAGCGAGACAAGTGCTTCTGAAGATAAAACACCAAAGAAACCTGACAAAGTACTTCCATGTCCGCGGTGCAATAGCATGGACACCAAATTCTGCTACTTCAACAACTACAACGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAAAGATACTGGACTGCCGGAGGAACAATGAGGAATGTGCCGGTGGGTGCTGGTCGCAGAAAAAACAAGAACATTTCGGCTGCAGCTGCATCACATTACCGACAGATAATGATCCCGGAGGCACTTCAAGGAGCTACACTCAATGCCTCCAATGGATTGCATAATGCCCTTTTGGGGAATAGAGCAGGTGTCTTGACTTTTGGTCCTGAGACCCCTCTCTGTGATACCATGAGTTCTGTGTTGAACATTGCTGAGCGAGCCCAAAGTTGTGTATCTAATGGGTTTCAGGCAACTGAGCCAAATAGTTGTGTTTCCTATAGTAAGGAGGGTGGTCATTCTACTGGAGTTTCTGTTTCAACAACTTCAGCTTCCAGCCATACAAGCTCACATGAATCAGTTGATAAAAGAGTTGAAGGTTTCAGTCCTCAATTATCATACTTCCCAGGTGCCCCTTGGCCTTATCCTGTGCCTCGTCATACAGTTTACCCACCTAGCTACCCTTTATCATTCTATACTACGCCATCATATTGGGGTTGTATGCCACCCTCTTGGAATATGCCATGTATGTCATCCCAATCTTCTGTTACCAACTCTGTCTCTGCCCCCATTTTAGGGAAACACTCAAGGAATGGGAACATCATTACCACATCCAATTCACAGAAAGAAATGCGTGGTGTAGAACATAACACTTCAGAACACAATTTCTTGATTCCCAAGACTCTTAGAATTGATGACCCTGGTGAAACAGCAAGGAGTTCGATGTGGTCAAAACTAGGAACCAAGAATGACAGGGCCAGTTCTGGAGGCCTTTTCCTAGCTTTTCCACCCAAGGGAAATGACATGAATCGCATGGTTGAAGCATCACCCGAGTTGCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTTACCTTCCATGAACAGACCTGA 1392 0.4583 MSEVKGSEIKLFGRTISLPHNDSSSPACLACPSPSSSPPQVTSATPQHQEDQEPIRKKLTSLQDDDASSHQTTEDLKSPASGILDNPKSPSAETETSLQKSSANGEQSETSASEDKTPKKPDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNISAAAASHYRQIMIPEALQGATLNASNGLHNALLGNRAGVLTFGPETPLCDTMSSVLNIAERAQSCVSNGFQATEPNSCVSYSKEGGHSTGVSVSTTSASSHTSSHESVDKRVEGFSPQLSYFPGAPWPYPVPRHTVYPPSYPLSFYTTPSYWGCMPPSWNMPCMSSQSSVTNSVSAPILGKHSRNGNIITTSNSQKEMRGVEHNTSEHNFLIPKTLRIDDPGETARSSMWSKLGTKNDRASSGGLFLAFPPKGNDMNRMVEASPELQANPAALSRSLTFHEQT 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01976 463 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Phco4g01976 463 PANTHER CYCLIC DOF FACTOR 2 1 462 IPR045174 GO:0003700|GO:0006355
Phco4g01976 463 MobiDBLite consensus disorder prediction 17 49 - -
Phco4g01976 463 MobiDBLite consensus disorder prediction 50 72 - -
Phco4g01976 463 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Phco4g01976 463 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Phco4g01976 463 MobiDBLite consensus disorder prediction 16 126 - -
Phco4g01976 463 MobiDBLite consensus disorder prediction 263 288 - -
Phco4g01976 463 MobiDBLite consensus disorder prediction 263 283 - -
Phco4g01976 463 MobiDBLite consensus disorder prediction 73 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01976 Phco-Chr4 39223836 39226551 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco4g01976 zf-Dof 4.6e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01976 4 39223836 39226551 Phco4g01976 4 39223836 39226551 ECH
Phco4g01976 4 39223836 39226551 Phco8g01347 8 14042849 14045541 ECH
Phco4g01976 4 39223836 39226551 Phco7g02236 7 39494555 39497088 ECH