Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01975 ATGAAAGCGTGGCCTGCTAGTGTCGTCTACTCTTCACAAGAAAACCTCACTCGATACGCTTCTTCTTCCTCCTACTCTTCTTCCCCTCCCTCTATGGGAATGGTCTATGCTGACATGGATTCTCTTTCTCTTTGCTCTAACTATGGTGTGGTTTCGTCTCATCAAGATTGTTATGTCTCCAACGGCGGCTCAAACTGGGGTTTGCCCTTTATGAGGGAATGCCTTGGGAGGAACTTTGAGGAACATCCCAACAGTGATGGGGCGGAAGAGGGTAAAGGGTCTGATAGCAGTGATGATGGGGGTGGGGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGAAGAGAACCCTAATGAGAATTCTAATAGTGGTTCGGGGCATTCCAAGCTCTGTGCAAGGGGGCATTGGAGACCAGCAGAAGATTCTAAGCTCAAGGAGCTTGTGGCTCTCTATGGCCCTCAGAACTGGAACCTCATAGCCGAAAAGTTAGAAGGAAGATCAGGCAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCGAGAATCAATAGGAGAGCGTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAATCACTGGCACGTTATAATGGCCAGAAAGTACAGAGAACAGTCGAGTGCCTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGGAGAGTGGAGGAAAACACAACAAGCAGCAATGTCTCTAGAGACACAGCCACTGCAGGGACAGAACCACCACCACCCTATTGTCTCAATCTCCCAAACGGAGGACTTGCCAACAACAATAACATGCCAAGTTTCCCATATGCTGCTGCACCCTTCCATGGAGTAGTTGCTCCTCCTGGTGGTGGGGTTGAGTATGGCTTAAATGGCTCACCCCACATGACTGCTTCCAAAGAAGCAATCTCAACCACCAAGCTGGCCCCTCCTCATATTGCCTTGTATCCTCAACAAACACCGCTTGATTTCTTTTCAGGAGGTAGAAGCAATGACATGGTGGGAGAGTATTTTGGCCAGAACCATAACCAGCCGTCTGGTTTTTACTCTCATTACCCCCAATATCTGATGCTAATGCAACACCAAAACAATCACAACTTTTACAGTTTCTCAAATTCCACAGCACAGATACTGGGCAGTGAAGCTTCACTATCATCAGTGGCAGAACACAGAGATCAAGCCATGAGCAGTGACCCCTCAGATGCAATTCCTCCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1344 0.474 MKAWPASVVYSSQENLTRYASSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGSNWGLPFMRECLGRNFEEHPNSDGAEEGKGSDSSDDGGGEDSDKVNHNANNFNEENPNENSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTTSSNVSRDTATAGTEPPPPYCLNLPNGGLANNNNMPSFPYAAAPFHGVVAPPGGGVEYGLNGSPHMTASKEAISTTKLAPPHIALYPQQTPLDFFSGGRSNDMVGEYFGQNHNQPSGFYSHYPQYLMLMQHQNNHNFYSFSNSTAQILGSEASLSSVAEHRDQAMSSDPSDAIPPPFIDFLGVGAT 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01975 447 ProSiteProfiles Myb-like domain profile. 136 182 IPR001005 -
Phco4g01975 447 MobiDBLite consensus disorder prediction 255 272 - -
Phco4g01975 447 CDD SANT 139 180 IPR001005 -
Phco4g01975 447 CDD SANT 190 230 IPR001005 -
Phco4g01975 447 MobiDBLite consensus disorder prediction 107 131 - -
Phco4g01975 447 SMART sant 187 235 IPR001005 -
Phco4g01975 447 SMART sant 135 184 IPR001005 -
Phco4g01975 447 MobiDBLite consensus disorder prediction 79 135 - -
Phco4g01975 447 Gene3D - 136 187 - -
Phco4g01975 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 237 IPR017930 -
Phco4g01975 447 MobiDBLite consensus disorder prediction 255 280 - -
Phco4g01975 447 MobiDBLite consensus disorder prediction 79 106 - -
Phco4g01975 447 Gene3D - 189 262 - -
Phco4g01975 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 182 IPR017930 -
Phco4g01975 447 FunFam MYB transcription factor 189 262 - -
Phco4g01975 447 Pfam Myb-like DNA-binding domain 136 182 IPR001005 -
Phco4g01975 447 Pfam Myb-like DNA-binding domain 188 231 IPR001005 -
Phco4g01975 447 SUPERFAMILY Homeodomain-like 136 229 IPR009057 -
Phco4g01975 447 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Phco4g01975 447 PANTHER MYB PROTEIN-RELATED 124 272 - -
Phco4g01975 447 FunFam MYB transcription factor 136 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01975 Phco-Chr4 39176562 39178371 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g01975 Myb_DNA-binding 2e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01975 4 39176562 39178371 Phco4g01975 4 39176562 39178371 ECH