Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01973 ATGACCGATTTTCCTGGTCCCCCAGACAAGTTAACGATGGGCAGGGTAAAACTAAAGATAAAGAGGTTGGAGAATACCAATGGCCGGCAAGCAACATATGCTAAAAGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTATCTATATTGTGTGATATAGATATCATACTTCTCATGTTTGCACCAAATGGAAAGCCTTCGGTATGTAGGGGGAGACGCAGCAACTTAGAGGAAGTTATCGCGAAGTTTGCTCAACTAACTCCTCAGGAAAGGGCAAAAAGGAAGTTGGAGACTCTTGAGGCACTGAAGAAAACGTTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTCTCGGTACAAGTTATTGGACTGAGTTTGATAAAATAACCAATGTGGAACAACTAGGGCAGATGGAAAATTCACTCAGGGAGTCCCTTAATCAAATTCGAAACCGTAAGGAAAATATAAAAAAGCAGCAACTTGTGTCGCTGCAATGCAATAATCAGTTCAATGAAATGAATATTCCCTTTAGAATGAGTGCAGAGCAGCATCTCCAACCTCTTTCATGGATTGCAAATGGTGACAGCCAAAATATAGTTTTACCTGAGGACTCAAGCATGTTTATCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGGAGTTATGCCAGTTATCTTGGGTCAAGTATGAAGAATGAGATGTCTAACTCGGCACAAGAAAATGGGGTCCTCAGTGACATGAGCAGTACTGCAAATATGAGACTACAATTGAATGGACAGTTTCCATACCTGCCATACAATTTTAATTTACTGAATAATTTGAAGTTTCAACCAACTGCAGAGATGAATCCACATGAAAATCCTGTAGATTATCAAGTGAATGGAAGCTTAGAAGCACCTAGATCTGGTTATGATTCTAATCACCATGGTTGGGCTTCCACATCAGGGCATTGTGGTGTTACTATGTTTGATGAGCAGTTGTATGCCCAGGCAAGCTCCACTGAAATGCACTATGGCTTCACATAG 1035 0.3971 MTDFPGPPDKLTMGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSVCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSYWTEFDKITNVEQLGQMENSLRESLNQIRNRKENIKKQQLVSLQCNNQFNEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEDSSMFIHKDVEGSASSSFGSYASYLGSSMKNEMSNSAQENGVLSDMSSTANMRLQLNGQFPYLPYNFNLLNNLKFQPTAEMNPHENPVDYQVNGSLEAPRSGYDSNHHGWASTSGHCGVTMFDEQLYAQASSTEMHYGFT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01973 344 Coils Coil 89 109 - -
Phco4g01973 344 Gene3D - 26 108 IPR036879 GO:0003677|GO:0046983
Phco4g01973 344 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Phco4g01973 344 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 66 IPR002100 GO:0003677|GO:0046983
Phco4g01973 344 ProSiteProfiles MADS-box domain profile. 13 65 IPR002100 GO:0003677|GO:0046983
Phco4g01973 344 SUPERFAMILY SRF-like 14 107 IPR036879 GO:0003677|GO:0046983
Phco4g01973 344 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 224 - -
Phco4g01973 344 CDD MADS_SRF_like 14 94 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco4g01973 344 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Phco4g01973 344 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Phco4g01973 344 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Phco4g01973 344 FunFam Agamous-like MADS-box protein AGL30 26 108 - -
Phco4g01973 344 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01973 Phco-Chr4 39093457 39098345 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco4g01973 SRF-TF 1e-17 No_clan