Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01970 ATGGATGCTTCCACAACCTCTGAACTCCCCCCTGGCTTTAGGTTTCACCCAACGGATGAGGAACTAATCGTCTATTACCTTTGCAACCAAGCCACATCAAAGCCTTGCCCTGCTTCCATCATCCCAGAAGTGGATCTCTACAAGTTTGATCCATGGGAATTGCCAGATAAAACAGAATTTGGAGAAAATGAATGGTATTTCTTTAGTCCACGAGACAGGAAGTACCCAAACGGGGTGAGGCCTAACCGAGCAACAGTGTCTGGGTATTGGAAGGCTACTGGCACAGACAAGGCAATCTATAGTGGATCTAAGCTTGTTGGGGTGAAGAAATCCCTAGTATTTTACAAGGGTAGGCCACCAAAGGGTGACAAGACTGATTGGATTATGCATGAGTACCGATTGGCAGAATCAAAACAACCAGCTAACAGGAAAATTGGGTCAATGAGGCTGGATGACTGGGTCCTGTGCAGAATTTATAAGAAGAAGAACATGGGAAAAACACTGGAGCACAAAGAGGCACACCCAAAAGTTCAAATGACTAATCTTATAGCTGCAAATAATGATGAACAGAAAATGATGAACCTTCCCAGGACTTGGTCCCTCACTTACCTTTTGGATATGAATTACTTGGGTCCTATTTTATCTGATGGCTCCTATTGCTCAACCTTTGATTTTCAAATTAGCAATGCCAATGTTGGAATTGACCCCTTTGTAAATTCTCAACCGGTTGAAATGGCCAATAATTATGTAGGAGACTCGGGTAAGTACTAG 771 0.4319 MDASTTSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDLYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKLVGVKKSLVFYKGRPPKGDKTDWIMHEYRLAESKQPANRKIGSMRLDDWVLCRIYKKKNMGKTLEHKEAHPKVQMTNLIAANNDEQKMMNLPRTWSLTYLLDMNYLGPILSDGSYCSTFDFQISNANVGIDPFVNSQPVEMANNYVGDSGKY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01970 256 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Phco4g01970 256 SUPERFAMILY NAC domain 6 161 IPR036093 GO:0003677|GO:0006355
Phco4g01970 256 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Phco4g01970 256 FunFam NAC transcription factor 18 165 - -
Phco4g01970 256 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Phco4g01970 256 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01970 Phco-Chr4 38989868 38991042 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco4g01970 NAM 6.2e-40 No_clan