Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01967 ATGGCAGCAGAAGAAGATGATCAGTTGCAACAAGTCAGATCCAAAGCCACAGAGCTTTTCATCAGAGAAGAATGGAATGCCTCGATCGAAGCCTATTCTCATTTCATCACCCTCTGCACCCAAACACTCTCCCATTCTCACCCAAACCAAAAGCTTCGCAGATCCCTCTGCATAGCCTTGTGCAATCGCGCAGAAGCGAGGTCCAAGTTGAAGGACTTCCACTGCGCCCTTCAGGACTGTGACCACGCTTTGGAACTCGATGCTACGCATTCGAAATCCCTTTTGTGCAAAGGTAAGATCTTGCTCTGCCTCAACCGGTATGCTTCCGCTCTGGAGTGCTTCAGAACCGCCACGCTTGATAGGAACGCTGAAAGCGTGAGCGGGTACTTGGAGAGGTGCAAAAGCTTGGAGCTTTTGTCCAAAACGGGGTGTTTGGATCTTTCGGATTGGGTTTCAAATGGGTTTCGAGGGAAGGTTCCAGAGCTTGCAGAGCACATTGGTGCCGTGGAGATTAGAAGATCTGAGATCAGTGGAAGAGGATTGTTTGCAACGAAGAATATTGATGCTGGATCGCTGATCTTGGTCACCAAGGCAATTGCCATGGAAAGGAGTATCATAATGGGAGGGGTTCAGGATCTGAGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGTTTGTTGGGAAGTGTCCCAGAACAAGGGGTTTGATTAATAGGTTGTCATGTGGGGAGAATGAGGATCAACTTGAGGTGCCTGATGTGGGTCTCTTTAGACCTGAGAGTGTGGAGAAGGATGGTGAAGTTGAGGTTGTTGTTGATATGGGTAAATTGGTTGGTATATTGGATGTGAATTCTCTCACTGAGGATGCTGTCTCGGCCAATGTGTTGAGGAGGGGCAATGATTGTTATGGTGTTGGCCTGTGGTTGCTCCCTTCCTTCATAAACCACTCTTGTTGTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCATCAAAGGATTTAAAGGCTGGGGAGGAGGTCACTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGTCTGTGAATTGGGGGATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAGGTGTTCTCCAAACAGGAAATAAGAGAGATTGAGATTGGTCTTGAGAGAGGGATGGATGTGGGGGGTGTGGTGTTCAAGTTGGAGGAACAATTGAAGAGGTTGAAGGTTAGGGGGAAGGAGAAAGGGTATTTGAGGGCATCATTTTGGGAAGCGTATTCTCAGGCTTATAGGACAGAGAGGGCCATGAAGAGGTGGGGAAGGAGAATTCCTACTGCGGAGGCTGTGGTTGATAGCATCACTGATGTGGTGGGAGGGGATCACAGGTTGCTTAAGTTGCTGATGGAGGAGTTGAAGAAAAATAGTGGTGGAGTTGTAGAGAGGGACAAAGTTTTCAAGATAGCAAAAGAAGTGTTTGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTCTGCAACTCTGCATTGGTGATTAA 1572 0.4739 MAAEEDDQLQQVRSKATELFIREEWNASIEAYSHFITLCTQTLSHSHPNQKLRRSLCIALCNRAEARSKLKDFHCALQDCDHALELDATHSKSLLCKGKILLCLNRYASALECFRTATLDRNAESVSGYLERCKSLELLSKTGCLDLSDWVSNGFRGKVPELAEHIGAVEIRRSEISGRGLFATKNIDAGSLILVTKAIAMERSIIMGGVQDLSEDAQLAMWKNFIDKVFEFVGKCPRTRGLINRLSCGENEDQLEVPDVGLFRPESVEKDGEVEVVVDMGKLVGILDVNSLTEDAVSANVLRRGNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLVVHASKDLKAGEEVTFAYFDPLCGLSKRKEMSVNWGIHCKCKRCRFEGEVFSKQEIREIEIGLERGMDVGGVVFKLEEQLKRLKVRGKEKGYLRASFWEAYSQAYRTERAMKRWGRRIPTAEAVVDSITDVVGGDHRLLKLLMEELKKNSGGVVERDKVFKIAKEVFGKVVKKQAMKTLLQLCIGD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01967 523 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Phco4g01967 523 SUPERFAMILY SET domain 168 381 IPR046341 -
Phco4g01967 523 SUPERFAMILY TPR-like 13 117 IPR011990 GO:0005515
Phco4g01967 523 CDD SET_SMYD 302 381 - -
Phco4g01967 523 ProSiteProfiles SET domain profile. 167 356 IPR001214 GO:0005515
Phco4g01967 523 SMART tpr_5 91 125 IPR019734 GO:0005515
Phco4g01967 523 SMART tpr_5 57 90 IPR019734 GO:0005515
Phco4g01967 523 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 515 - -
Phco4g01967 523 Pfam SET domain 178 355 IPR001214 GO:0005515
Phco4g01967 523 SMART set_7 167 362 IPR001214 GO:0005515
Phco4g01967 523 Gene3D SET domain 260 385 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco4g01967 SET 1.7e-12 No_clan