Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01893 ATGTCAAACCCAACACCAAAACCTACTCCCACTATCATCCTTCATCTCATTTTATGTTGCTGCTTCTGTTCATCCCTTGTTATGGGAGCCACTTACAATGTGGTCAGCTTTGGTGCCAAATCAGACGGTAAAACGGACTCAACCAAGGCGTTCCTCAATGCATGGGCCAAGGCTTGTGCTTCCACCAACCCTTCCTCGGTTTATGTGCCGCAAGGGAGGTTCTTGCTCAGAAGTGCCACCTTCGGTGGCCAATGTCACAACAAAGCTATCACCTTTATCATTGATGGCACTTTGGTGGCTCCTTCTGATTACAGGGTCATCGGAAATGCTGGTAACTGGTTGCACTTCCAGAGTGTGAACGGGGTTTCCATTCGTGGTGGTGTGTTGGATGGCCAAGGCACAGCCCTGTGGAGTTGCAAGAACTCCGGCAAAGGAAACTGCCCCACCGGTGCCACGACATTGGCTTTCACCAACTCGAATAACATCGCAATTAGTGGGTTAACCTCATTGAACAGTCAAATGTTTCACATAGTGTTCAATGGATGCCAGAATGTGAAGGTGCAAGGAGTGAAGGTCATGGCCGACGGAAACAGTCCTAACACCGATGGCATTCATGTTCAAATGTCCTCTCACGTCACCATCCTCAACTCCAAAATTCGAACCGGAGATGATTGCATCTCCATAGGCCCTGGAACCACTAACCTGTGGATTGAAAACATTGCATGTGGACCAGGACATGGGATAAGCATTGGGAGCTTGGGAAAAGGTTCGAGAGAAGCTGGTGTACAAAATGTGACAGTTAAAACGGTTACCTTCACCGGGACTCAAAATGGTGTTAGAATCAAGACCTGGGGGAGACCCAGTGACAGCTTTGTCAGGAACATTCTTTTCCAAGATGCTATCATGGTCAATGTCGAAAACCCCGTTATAATTGACCAAAATTACTGCCCAGATAACAAGGGCTGCCCGGGTCAGGCATCCGGAGTGAAAGTGAGTGATGTGACATACCAAGACATTCATGGAACATCTGCCACTCAGGTTGCTGTGAAATTTGATTGCAGTTCCAAGTATCCATGCAGCGGGATACGGTTGGAGGATGTGAAGCTCACATACAAGAACCAACGTGCTCTATCTTCCTGCAACCATGCAGATGGCGCCGCATTGGGTTCAGTTCAACCCCAGAGTTGCTTTTAG 1194 0.4824 MSNPTPKPTPTIILHLILCCCFCSSLVMGATYNVVSFGAKSDGKTDSTKAFLNAWAKACASTNPSSVYVPQGRFLLRSATFGGQCHNKAITFIIDGTLVAPSDYRVIGNAGNWLHFQSVNGVSIRGGVLDGQGTALWSCKNSGKGNCPTGATTLAFTNSNNIAISGLTSLNSQMFHIVFNGCQNVKVQGVKVMADGNSPNTDGIHVQMSSHVTILNSKIRTGDDCISIGPGTTNLWIENIACGPGHGISIGSLGKGSREAGVQNVTVKTVTFTGTQNGVRIKTWGRPSDSFVRNILFQDAIMVNVENPVIIDQNYCPDNKGCPGQASGVKVSDVTYQDIHGTSATQVAVKFDCSSKYPCSGIRLEDVKLTYKNQRALSSCNHADGAALGSVQPQSCF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01893 397 SUPERFAMILY Pectin lyase-like 15 397 IPR011050 -
Phco4g01893 397 SMART pbh1 232 252 IPR006626 -
Phco4g01893 397 SMART pbh1 262 283 IPR006626 -
Phco4g01893 397 SMART pbh1 182 208 IPR006626 -
Phco4g01893 397 SMART pbh1 326 366 IPR006626 -
Phco4g01893 397 SMART pbh1 209 230 IPR006626 -
Phco4g01893 397 PANTHER - 30 384 - -
Phco4g01893 397 Gene3D - 24 395 IPR012334 -
Phco4g01893 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Phco4g01893 397 FunFam Polygalacturonase 7 22 396 - -
Phco4g01893 397 Pfam Glycosyl hydrolases family 28 59 382 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01893 Phco-Chr4 37570049 37572190 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01893 4 37570049 37572190 Phco4g01893 4 37570049 37572190 ECH