Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01805 ATGGTTGCGGAGGCGCTCGAAGTTGTTCATCAGCATTTAATGGTTTCCACCAGGGGGGAGAAGAGTGCAGAATCTAACTCCTCTGCCGCGAATGGCGTTAAAGGAGCTAAGGATCCAAAGAAATTGGAAGAATCGAAGGCTTCTCCGACTCCACCGCGGAGGTCGAGCGCCCGAATTCAAGCGCTGCAGAAAGCGGAGAAGGCACTTAATGGACCAAATGCTAAGGTAGTTAAGGAGAACAACTGCCAAATCGATGTTAAGGCAAGGAAGGGTAAGAAGCGCAGTAGAAAGAGAGGCGGCGAGGAAAGTATGCCGCTAGAAGAAGAGGATGTTTTGCCGCCGAAGAAGAAGCCGTTGGCGTGCGGCAAGGATGAGGTGGAAGTAGAGAATGGGAAGGAGGAACCGGACAATGCGAATGGGGCTTTTGGAGATAAGAGTGACTTCCTAAAAGTCAAAGAGACTATAAGATTATTCAACAAACATTATCTTCAATTTGTCCAGGTAGAAGAGAAGAGGTGTGGGAAGGCTGAGGCTGAGCGGATAGATGCTAAAAAGCCTTCTCAGAAGGCTTCAAAGTCGAAGAAAGGTGCTACACCTGAAGATTCAAAGACCACGGCTAAACGACCAGATCTTAAGGCCATAACCAAGATGATGGGAAATAATGAGATACTGTACTCTGAGAAAAGAATTGGAAGCATTCCAGGTATTGAAGTTGGGTATCAGTTCTATTCTCGTGCTGAAATGGTTGCTGTTGGTTTTCATAGCCACTGGTTAAATGGTATTGATTATATGGGCCAGTCTTATGCCAAAGCTTATAACTATGAATTTCCAGTTGCTGTTGCAATTGTTTTATCTGGCATGTATGAGGATGATCTGGATAATGCTGAGGATGTTGTGTACACTGGTCAAGGTGGTCATAATCTGACTGGTGATAAGCGTCAAATTCGGGATCAAAAGTTGGAGCGTGGGAACCTAGCTCTCAAGAATTGTGCGGAGCAATGTGTGCCTGTTAGAGTGATTCGAGGTCATGATTCTTCAAGTAGTTACTCTGGTAAAGTGTACACATATGATGGCTTGTACAAAGTTGTCAATCATTGGTCAGAGACAGGGATATCTGGATTTAAAGTCTTTAAGTTTCGACTTAGGAGGCTTGATGGGCAACCTACATTAACCACTAATCAGGTATATTTTACTAATGGACGTGTACCTCAATCTATAGCAGAAATACGCGGATTGGTTTGTGAGGATATCACCGGAGGTCAAGAAGATATACCCATTCCGGCTACAAATGTGGTAGATGATCCCCCTGTTCCACCCACAGGTTTCACATATTGTAAGTCTGTTAAGGTAGCAAAAAATGTGAAACTTCCCACTAATGCCACTGGATGCAAATGCAAAGGCTCCTGTAATGACCCAACAACATGTGCATGTGCTTTGCGTAATGGCTCTGATTTCCCCTATGTATCTCGAAATGGTGGCAGGTTAGTCGAAGCCAAAGATGTAGTATTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTCAACCGAACTTCACAAAAAGGACTTAGATATCGTCTGGAGGTTTTCCGGACTGCCAAAAAAGGATGGGCTGTAAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGGTAGAACGGAAGACATGGACAGCGTGTTGGAAAACAATTATATTTTTGAGATAGATTGCTTGCAAACGATCAAGGGTCTTGGTGGTAGAGAGAGGCGGTCACAAGATGGAGAGATTCCTGAAGATATTTTGAACAAATATGATGATCAAAGTTCTGAAAGTGTGCCAGAGTTTTGTATTGATGCAGGGTCTACTGGAAACATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATCTGTTTGTTCAGTGTGTTTTGAGCACACACGATGATTTGAGGTTGGCTCGTGTCATGCTGTTTGCTGCGGACAACATACCCCCTTTGCAGGAATTAACGTATGACTATGGTTATGCGCTGGATAGCGTGTTGGACTCCGATGGGAAGATCAAGCAAATGCCATGTTATTGTGGAGCCGCAGACTGCAGGAAGCGATTATTCTAA 2118 0.4424 MVAEALEVVHQHLMVSTRGEKSAESNSSAANGVKGAKDPKKLEESKASPTPPRRSSARIQALQKAEKALNGPNAKVVKENNCQIDVKARKGKKRSRKRGGEESMPLEEEDVLPPKKKPLACGKDEVEVENGKEEPDNANGAFGDKSDFLKVKETIRLFNKHYLQFVQVEEKRCGKAEAERIDAKKPSQKASKSKKGATPEDSKTTAKRPDLKAITKMMGNNEILYSEKRIGSIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYAKAYNYEFPVAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCAEQCVPVRVIRGHDSSSSYSGKVYTYDGLYKVVNHWSETGISGFKVFKFRLRRLDGQPTLTTNQVYFTNGRVPQSIAEIRGLVCEDITGGQEDIPIPATNVVDDPPVPPTGFTYCKSVKVAKNVKLPTNATGCKCKGSCNDPTTCACALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILGRTEDMDSVLENNYIFEIDCLQTIKGLGGRERRSQDGEIPEDILNKYDDQSSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPLQELTYDYGYALDSVLDSDGKIKQMPCYCGAADCRKRLF 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01805 705 SMART PostSET_3 689 705 IPR003616 -
Phco4g01805 705 Pfam SAD/SRA domain 230 387 IPR003105 -
Phco4g01805 705 SUPERFAMILY SET domain 411 681 IPR046341 -
Phco4g01805 705 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 17 698 - -
Phco4g01805 705 SMART G9a_1 226 387 IPR003105 -
Phco4g01805 705 MobiDBLite consensus disorder prediction 18 32 - -
Phco4g01805 705 Pfam SET domain 537 675 IPR001214 GO:0005515
Phco4g01805 705 Gene3D SET domain 407 705 IPR046341 -
Phco4g01805 705 ProSiteProfiles Post-SET domain profile. 689 705 IPR003616 -
Phco4g01805 705 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 42 705 IPR025794 GO:0016571
Phco4g01805 705 SMART set_7 526 681 IPR001214 GO:0005515
Phco4g01805 705 MobiDBLite consensus disorder prediction 14 141 - -
Phco4g01805 705 ProSiteProfiles SET domain profile. 526 675 IPR001214 GO:0005515
Phco4g01805 705 ProSiteProfiles Pre-SET domain profile. 461 523 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco4g01805 705 Gene3D - 214 400 IPR036987 -
Phco4g01805 705 SUPERFAMILY PUA domain-like 213 405 IPR015947 -
Phco4g01805 705 ProSiteProfiles YDG domain profile. 231 383 IPR003105 -
Phco4g01805 705 SMART preset_2 414 510 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco4g01805 705 MobiDBLite consensus disorder prediction 177 207 - -
Phco4g01805 705 Pfam Pre-SET motif 418 518 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco4g01805 705 MobiDBLite consensus disorder prediction 97 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01805 Phco-Chr4 34562563 34564680 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco4g01805 SAD_SRA 2.4e-50 CL0178