LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g01709	ATGGCGGGTGGCAAGCTTCATCCTGGTTCAAACATGTCACTTCTCCTCCAAAACGACAGGCTCCCTTGCTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCACACCTCTAACGCTGCTTCCTTCCAAGGTTCAAAATCTATGGTTGATTTTGAGAATGTTAGTGGGGGCAGGGTGACGGATAGGCCCTTTTTTCAAGCGTTGGAGAAGGAAGATAACTGTGATGACGATTATGAGGGTTGCTTCCATCAACCGGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTCGAGAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAGCAGCTAGAAAAAGATTATGGCACATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAGTCTTCTTCAAGAGAATGGCAAGTTAAAAGCAGAGGTGAATTCCCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGAATTCGGACGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATTCAACATCTGAAAATGGGACAAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCCTCTTCATTCGTGGAGCCTGCTGATTCCTCCCATGCTTTTGAACCAGACCACTCCGACTTCTCCCAAGATGAAGAGGATAACCTTAGTGAAAGCCTTTTGACCCTCCCTTGCTTACCAAAGGTTGAAGAAGCCTGCTATGATGACCCTCCTGAAAACCCTTGTAATTTTGGCTTCCATGTTGAGGATCAAACCTTCTGTTTCTGGCCTTATTGA	984	0.4533	MAGGKLHPGSNMSLLLQNDRLPCSSEVLESLWAHTSNAASFQGSKSMVDFENVSGGRVTDRPFFQALEKEDNCDDDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLLQENGKLKAEVNSLESKLILRDKEKENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDHSDFSQDEEDNLSESLLTLPCLPKVEEACYDDPPENPCNFGFHVEDQTFCFWPY	327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g01709	327	PRINTS	Lambda-repressor HTH signature	121	137	IPR000047	GO:0003677
	Phco4g01709	327	PRINTS	Lambda-repressor HTH signature	112	121	IPR000047	GO:0003677
	Phco4g01709	327	CDD	homeodomain	84	142	IPR001356	GO:0003677
	Phco4g01709	327	SUPERFAMILY	Homeodomain-like	76	143	IPR009057	-
	Phco4g01709	327	SMART	HOX_1	83	145	IPR001356	GO:0003677
	Phco4g01709	327	MobiDBLite	consensus disorder prediction	183	220	-	-
	Phco4g01709	327	Gene3D	-	80	147	-	-
	Phco4g01709	327	MobiDBLite	consensus disorder prediction	238	285	-	-
	Phco4g01709	327	ProSitePatterns	'Homeobox' domain signature.	116	139	IPR017970	GO:0000981\|GO:0006355
	Phco4g01709	327	Pfam	Homeobox associated leucine zipper	141	182	IPR003106	GO:0006355\|GO:0043565
	Phco4g01709	327	FunFam	Homeobox-leucine zipper protein HAT5	79	143	-	-
	Phco4g01709	327	Coils	Coil	154	181	-	-
	Phco4g01709	327	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	68	229	IPR045224	GO:0003700
	Phco4g01709	327	MobiDBLite	consensus disorder prediction	183	201	-	-
	Phco4g01709	327	ProSiteProfiles	'Homeobox' domain profile.	81	141	IPR001356	GO:0003677
	Phco4g01709	327	Pfam	Homeodomain	86	139	IPR001356	GO:0003677
	Phco4g01709	327	MobiDBLite	consensus disorder prediction	267	281	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g01709	Phco-Chr4	18391750	18393347	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Phco4g01709		Homeodomain	3.9e-16	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g01709	4	18391750	18393347	Phco8g02646	8	38645210	38648351	PCT