Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01689 ATGTCCCAGGTTCTTCGCTCACTTTTCACCTTAAAGCATCTCTCACTACCGTTCCACTCTTTTGTTCCTCTGAACCGGAACTTTTCTTTCATTTTCCCAACATCACTCTCTGTCAGATGCAACCACTCCAACCACGTTGAACCATTCCCACCACTGCCACAAAATCCTCCAGTTACAGAATTGCCGCTAAGGGTGTACGCAGATTACTCCGTTTACACATCGAAGGGTGTGCTCACCTTGGCTCCTAAACCTCCGGGATTTGAATCAAAAGCCTCTGGGGCGTTTGGGGTGTCAAGGGAAGGTTATATGTTGCTCCAGTTTGCTCCTTCGGTTGGTACTGAAGAATCCATATATGATTGGAACCAAAAGCAGGTATTCTCACTTTCGGTTAGTGAAATGGGAACTGTAATTAGCCTTGGTGCAAAGGATTGTTGGGAATTTTCTCGTAAGATTGCTAAGGCAAAAAGCAATGGAATTGAAGTCAGAAAAGTTTTGAAGTTGGAGCCACTTCTGGATGCTACTGGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGCGAACATGGAGGAAAACATCTATCTCCCTGTTACAAGGGCACAGCTAGCAGTTTTAAGGTCAATTTTCAATTATATCATGCCGTACCTTCTAGGTTGGAATGCCTTTGCAAGCACCGTAAAGCCAGAGGTATATAGTCAAGTAAACAGTGCCAACCCCACATACAGTGCAAACAATGAACGAAAAAGATATTGA 753 0.4329 MSQVLRSLFTLKHLSLPFHSFVPLNRNFSFIFPTSLSVRCNHSNHVEPFPPLPQNPPVTELPLRVYADYSVYTSKGVLTLAPKPPGFESKASGAFGVSREGYMLLQFAPSVGTEESIYDWNQKQVFSLSVSEMGTVISLGAKDCWEFSRKIAKAKSNGIEVRKVLKLEPLLDATGHSFSLSVYKKPANMEENIYLPVTRAQLAVLRSIFNYIMPYLLGWNAFASTVKPEVYSQVNSANPTYSANNERKRY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01689 250 Gene3D Transcriptional Coactivator Pc4; Chain A 59 237 IPR009044 GO:0003677|GO:0006355
Phco4g01689 250 SUPERFAMILY ssDNA-binding transcriptional regulator domain 64 246 IPR009044 GO:0003677|GO:0006355
Phco4g01689 250 Pfam Whirly transcription factor 71 208 IPR013742 GO:0003697|GO:0006355|GO:0006952
Phco4g01689 250 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 55 240 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01689 Phco-Chr4 17702466 17705573 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Phco4g01689 Whirly 9.4e-42 CL0609