Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01677 ATGGGTAACTGCCTAGATTCTTCTGCCAAAGTTGATGCAGCTCAGAGTTCCAGATCCACTTCTGGAATCTCTAAAGCTACACCTTCCAGCTTATCTATTCCATCGTACAGCGAGAAAAGCAACGCCTTAAGTCTTCCCACACCGAGGTCTGAGGGTGAAATCTTGTCTTCTCCCAATCTCAAGTCCTTCACATTCAATGAGCTGAGGAACGCCACCAGAAATTTTCGGCCTGATAGTCTTCTCGGTGAAGGGGGATTTGGGTGCGTCTACAAAGGATGGATTGATGAACACACATTTACAGCTTCAAAGCCTGGATCAGGAATGGTTGTTGCTGTAAAGAAGCTGAAACCTGAAGGTTTTCAAGGTCATAAAGAGTGGTTGACTGAGGTTAACTACCTTGGACAATTGTACCATCCTAATCTGGTGAAATTAATTGGTTACTGCTTGGAGGGAGAGAATATGCTATTGGTCTATGAGTTTATGCCGAAAGGGAGCTTAGAGAACCATCTGTTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTAGCTATTGGTGCTGCTAGAGGACTCTCTTTTCTTCATAACGCCAATTCACAAGTCATATACCGTGATTTTAAAGCCTCTAATATCCTACTTGATGCGGAGTTCAATGCTAAACTTTCTGACTTTGGTTTAGCTAAGGCGGGTCCTACTGGTGATAGAACTCACGTCTCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTAGGTTGACAGCCAAAAGTGATGTCTACAGCTTTGGAGTTGTGTTGCTTGAACTTTTATCTGGAAGACGTGCAGTTGATAAAACAATAGCTGGTATGGAGCAGAATCTGGTGGACTGGGCAAAACCATATTTGAGCGACAAACGAAGACTGTTCCGGATCATGGATACCAAGTTGGAGGGGCAGTACCCGCAAAAGGGTGCCTTCATGGCTGCCACACTTTCTCTACAATGCCTCAACAGTGAGGCCAAGACAAGGCCTCCAATGACAGAGGTTTTAGCCACTCTGGAACAGATAGAAGCCCCCAAAACTACAACCAGAAACTCCTATTCAGAACACCACAGAGTTCACACTCCTGTGAGAAAATCTCCTGCGCGAAATCGGTCACCGCTAAATCTAACTCCTTCCGCATCCCCTCTTCATGCTCACCGGCAATCGCCTCGTGTGCACTGA 1230 0.4569 MGNCLDSSAKVDAAQSSRSTSGISKATPSSLSIPSYSEKSNALSLPTPRSEGEILSSPNLKSFTFNELRNATRNFRPDSLLGEGGFGCVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLYHPNLVKLIGYCLEGENMLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNANSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGMEQNLVDWAKPYLSDKRRLFRIMDTKLEGQYPQKGAFMAATLSLQCLNSEAKTRPPMTEVLATLEQIEAPKTTTRNSYSEHHRVHTPVRKSPARNRSPLNLTPSASPLHAHRQSPRVH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01677 409 MobiDBLite consensus disorder prediction 360 409 - -
Phco4g01677 409 FunFam Serine/threonine-protein kinase BIK1 43 160 - -
Phco4g01677 409 MobiDBLite consensus disorder prediction 1 53 - -
Phco4g01677 409 CDD STKc_IRAK 81 358 - -
Phco4g01677 409 PANTHER OS01G0588500 PROTEIN-RELATED 30 359 - -
Phco4g01677 409 MobiDBLite consensus disorder prediction 384 400 - -
Phco4g01677 409 MobiDBLite consensus disorder prediction 9 53 - -
Phco4g01677 409 FunFam Probable serine/threonine-protein kinase PBL8 161 374 - -
Phco4g01677 409 Pfam Protein tyrosine and serine/threonine kinase 79 354 IPR001245 GO:0004672|GO:0006468
Phco4g01677 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Phco4g01677 409 SUPERFAMILY Protein kinase-like (PK-like) 47 355 IPR011009 -
Phco4g01677 409 ProSiteProfiles Protein kinase domain profile. 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01677 409 Gene3D Transferase(Phosphotransferase) domain 1 161 381 - -
Phco4g01677 409 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Phco4g01677 409 ProSitePatterns Protein kinases ATP-binding region signature. 81 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01677 Phco-Chr4 17418615 17421441 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco4g01677 PK_Tyr_Ser-Thr 3e-47 CL0016