Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01668 ATGGGTGATGCGAAAGAGCTTCGTCCTAATACACGATACCTGTTGCGAGAACACTTGCCCCATCCTATGTCTTTTGTCTATGACTTTTTATTAATGCCTAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACATCCACCTTCTCTCACGTCAATTCTACCCGCGTGTACACCTCAAGAATATCATGGGGGAGTGACCTTTCTAGGAAAGAGATCCATGTCGTTTTCATCAGGAATTGAGCACGGAGAAGAAGCCAATGCTGAGGAAGATTTGTCCGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGAAAAATGCAACTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTACGATCTCCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAACTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCTATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTATCTACACATCAGCCGAGCAGACCCCTCTTTCCATCTTCTGCTAGGCCTGCAGGAGTAGCTCAGCTTTTCCAAACTTCTTCAAGACCTGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGGCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCACCATTTCAATTGA 954 0.4497 MGDAKELRPNTRYLLREHLPHPMSFVYDFLLMPKTCNEMAFFPANFMLQTPHHDDHQHPPSLTSILPACTPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDALQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRPLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQHHFN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01668 317 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Phco4g01668 317 Pfam Homeobox associated leucine zipper 169 209 IPR003106 GO:0006355|GO:0043565
Phco4g01668 317 Pfam Homeodomain 114 167 IPR001356 GO:0003677
Phco4g01668 317 Gene3D - 106 175 - -
Phco4g01668 317 SUPERFAMILY Homeodomain-like 105 171 IPR009057 -
Phco4g01668 317 Coils Coil 161 209 - -
Phco4g01668 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 93 245 IPR045224 GO:0003700
Phco4g01668 317 CDD homeodomain 114 170 IPR001356 GO:0003677
Phco4g01668 317 MobiDBLite consensus disorder prediction 92 119 - -
Phco4g01668 317 MobiDBLite consensus disorder prediction 214 237 - -
Phco4g01668 317 FunFam Homeobox-leucine zipper protein ATHB-13 106 173 - -
Phco4g01668 317 PRINTS Lambda-repressor HTH signature 140 149 IPR000047 GO:0003677
Phco4g01668 317 PRINTS Lambda-repressor HTH signature 149 165 IPR000047 GO:0003677
Phco4g01668 317 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Phco4g01668 317 SMART HOX_1 112 173 IPR001356 GO:0003677
Phco4g01668 317 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01668 Phco-Chr4 17168915 17171730 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g01668 Homeodomain 1.7e-15 CL0123