Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01666 ATGTCCACCAGAAGATCTCGTTCCAGACAATCCGGTGCTTCTGCTGAGATCACGGATGCGCAAATCACCGATCTCGTTTCCAAGTTGCAACAACTTATCCCTGAGCTTCGAGCCAGGCGCTCCGACAAGGTTTCAGCTGCTAAGGTATTGCAGGAGACATGCAACTATATAAAAAACTTGCACAGAGAGGTTGATGATCTAAGTGATCGATTATCAGAGCTTCTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATTAGTAATGAATTGTGGTCAGCTTCTATGGCTGTAAATAAAATGGACTACATCCCTTTTACATGGATAGTGTCGAATAATTTTTCAAATTTGGAGGCTGCAATGCTTGAGTTTAATCTTAGTAATCTATCTTATGAGAGAAATTCTGCAGTTTTGTGTGGACCCATTAGAAGGGTCAAGGTTGAAGCTGACAGTGCCTCTAACATGTGA 486 0.4239 MSTRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLISNELWSASMAVNKMDYIPFTWIVSNNFSNLEAAMLEFNLSNLSYERNSAVLCGPIRRVKVEADSASNM 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01666 161 CDD bHLH_AtPRE_like 17 77 - -
Phco4g01666 161 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Phco4g01666 161 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Phco4g01666 161 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Phco4g01666 161 Coils Coil 57 77 - -
Phco4g01666 161 FunFam Transcription factor ILI6 7 89 - -
Phco4g01666 161 Gene3D - 20 89 IPR036638 GO:0046983
Phco4g01666 161 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01666 Phco-Chr4 16919844 16921077 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g01666 HLH 2.7e-05 No_clan