Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01656 ATGGAATTGGAGGCTGATCATCATCAAAATGGGATCCGAACCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACCTTGATGACGTCACAGAGCAACCTTGTTCCACCACTACCAGGGACACTGTGCTAACTGCAACTACTATTACTACTACTTCTTCTGCTACGAATAACAACCTCCACTTGGCCGACCAGTCCAAAAAGCCTCCGCCAAAGAGGACTTCCACAAAGGACCGCCACACCAAGGTCGATGGCCGAGGCCGCCGGATCCGCATGCCGGCGGCCTGTGCTGCCAGAGTCTTTCAGCTCACGCGTGAGCTCGGACACAAGTCTGATGGAGAGACCATCGAGTGGCTCCTTCAGCAGGCGGAGCCTTCGGTCATCGCTGCCACCGGCACCGGCACCATTCCAGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCGTCGCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACCTCCACTGCCGCCGCTGCGGCGGCGGCGCAGCTAAGGAACCGCGCAGAGTGGGACCGGAACATGAGCATGGTGATGGAGGATTCTCGTAGGAGCATGTTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTCAACCCTATGGGTAACATCAATGTAATTCAACAAGCGAAACAAGAGCTTCGAGAAGAATCAGGTGGCGGTCTTGAATTGGTGGCTACGGATTCTGATGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGCTCACTTCCGTCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCAGGTCACGGTAACCAATCCATGAGTGGTGGTGGTGGTGGTGGCGGCGGCAATGGTAACGATAATCCCATTTGGGCAATTCCCTCTGTTGGGAACAGTGGGGTGTATAGAGGAGCTATGTCTCCCCCGGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGCCCCTTATGCCCGGTGGTCAACTAGGTTCAGGTATGGTTGGTGGCGGAGGTGGCGGTGGCGGCAGCGGCAGTGCTCAACTCCTAAGTGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGACAGATTCCGGCGAACGGCGTCTCGGAGTCTCCGGGAAGCGCTGGACAACCTCACGGCGGAGATGATGGACGTGACTCAACCAGTCAACATTCCTGA 1269 0.5477 MELEADHHQNGIRTRPNFPLQLLEKKDLDDVTEQPCSTTTRDTVLTATTITTTSSATNNNLHLADQSKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAAAAAAAQLRNRAEWDRNMSMVMEDSRRSMLENTSSISAILNFNPMGNINVIQQAKQELREESGGGLELVATDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPSSHASNTAAFWMVAGHGNQSMSGGGGGGGGNGNDNPIWAIPSVGNSGVYRGAMSPPGGIHFMNFASPMPLMPGGQLGSGMVGGGGGGGGSGSAQLLSESNLGMLAALNAYRQIPANGVSESPGSAGQPHGGDDGRDSTSQHS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01656 422 Pfam TCP family transcription factor 75 206 IPR017887 -
Phco4g01656 422 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 54 384 IPR005333 GO:0003700
Phco4g01656 422 MobiDBLite consensus disorder prediction 55 84 - -
Phco4g01656 422 MobiDBLite consensus disorder prediction 395 422 - -
Phco4g01656 422 MobiDBLite consensus disorder prediction 67 84 - -
Phco4g01656 422 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01656 Phco-Chr4 16495242 16496510 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco4g01656 TCP 6e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01656 4 16495242 16496510 Phco4g01656 4 16495242 16496510 ECH
Phco4g01656 4 16495242 16496510 Phco8g01330 8 13859125 13860315 PCT