Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01638 ATGATGGAAGACATAAATAATGAGGCTGAGAAACTTGATGAAGTTATGCTACCTGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTGACTATTGAGCTCATCAAACAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCGACCACTGGAGAGAAAGAGTGGTATTTCTATTGTCCCAGGGATAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACCGGGGCTGGATTCTGGAAAGCTACAGGAACTGATAGGCCTATCTACTCCTCAGAAGGTTCGAAGTGCATTGGCCTGAAGAAATCTCTAGTGTTTTATAAGGGTAGAGCTGCCAAAGGAGTTAAAACTGATTGGATGATGCATGAGTTCAGACTACCTTCTCTCACGGACTCACTGTCCACAAAGTACGTAGACAAGACCATTCCTGCTAATGGATCATGGGCTATCTGCAGGATATTCAAGAAAACCAATTCTACGGCTCAAAGAGCTTTATCTCACTCTTGGGTCTCTTCCCTCCCTGAAACAAGAACCTCTGATCATATCCTAACCAAAGATCAAGACAGCACCCAGTTTTGTTCAGACATATCATTTACAAAGAAAACTACCTTAGCCAGCCAGTACTGTACTAACAATTACAATGATGCACCACCTTTAACCCCTAATAGTAGTACAACACTTTGTCCCTTAGATGCTGCCTCATACAAATCCATCATTAACCCATTGCTTTACAAAGCCTTTGATAATTTTCCCATTTTAAATGGAGACCTTAGCACGAGCTTTCTATTCTCATCTCCTTTTGAAACGTCAGATGGTAATACTAATGCTAAATCTACAATGGACGTTTCTTCCATGTTGTTGAACATGTCATCCTCGGTTCTTGGAGATTTCAACAAGACTTCAGAGGATAATACAAATACAAGTACAAGCTTTGGTGGGGTGCAAGAGCAGTGTAGTGGCTACCCATTACCATTTCTACGTGAGATGCAAACTACATTTGGTGACCCACAATATGATAATTTGAATGCACTGGTAAAGGCTCCTAATGTGAATATGCCTCGGGTTGAGGACCAAGAATTAGGCTTAGAGTTGGAAACAGTAAGATCCATTGGGTTTCCATTCAGTGGCATGCCATTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTTCCTTCTGATGTCTCATCTACTTATTCCACAACTAAGTGCAATACTTAG 1287 0.4149 MMEDINNEAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSTKYVDKTIPANGSWAICRIFKKTNSTAQRALSHSWVSSLPETRTSDHILTKDQDSTQFCSDISFTKKTTLASQYCTNNYNDAPPLTPNSSTTLCPLDAASYKSIINPLLYKAFDNFPILNGDLSTSFLFSSPFETSDGNTNAKSTMDVSSMLLNMSSSVLGDFNKTSEDNTNTSTSFGGVQEQCSGYPLPFLREMQTTFGDPQYDNLNALVKAPNVNMPRVEDQELGLELETVRSIGFPFSGMPFNIGDAWKSNLLWDTSSFPSDVSSTYSTTKCNT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01638 428 Gene3D NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
Phco4g01638 428 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Phco4g01638 428 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Phco4g01638 428 FunFam NAC domain-containing protein 35 25 176 - -
Phco4g01638 428 ProSiteProfiles NAC domain profile. 16 173 IPR003441 GO:0003677|GO:0006355
Phco4g01638 428 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01638 Phco-Chr4 16183312 16184860 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco4g01638 NAM 7.6e-37 No_clan