Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01619 ATGCAAAATCAAAGCATGCATTTTGTGTTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAACTTCACCAACGGTTCATTGAGGCGACAAATCAGCTTGGAGGTGCAGATAAAGCAACTCCAAAGAGTCTTATGCGGGTGATGGGGATTCCAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGATACCAGCTCTGACAGCAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGAAAACATGGAGATAGCTCAGGCACTCCAAATGCAAATGGAAGTACAAAGGAAGCTTTATGAACAAATTGAGGTGCAGAAGCATTTGCAGCTCCGAATTGAAGCTCAAGGGAAGTATTTGCAATCAGTGCTAAAGAAGGCACAGGAAGCACTTGCTGGATACAACTCTGCCCCAGTGGGGATAGAACTCACAAAAGCTGAACTTTCTCAGCTAGTTACCATCATCAACAATGCTTGTCCAAGTTCTCCCACCTCAGAACTAACAGAGACAAGAGGGTTGAGTTTAAGCTGTGGGGATAGGAAAAGAGACAGAGGCACTATGTGTTCACTGGAAAGTTCCTTAACATCATCTGAAAGCTCTGGGAGAAAGGAAGAGAAACAGTCAATGGAAGAGATAGAGGAGTTCAAAAGCTCCAATAATGCTTCACATGAATTGCCATTGATGGGCATTCACACTGAGAATAAAGCGTCCAACGGAGGCTCAAGCAGTGAGGCTAGTGGGAGAAAGAGAAGTGCAGCAACAAAATCTAATGATGGTAGGTGTTTTGTTGAACAACCATGTGGGAAAAGAGGTGGCAACAAGTTGAGGAAACCAGAAATGCTTGACTTGAACAGTCAATGCCAGAGTGACATGGACTCAACAACTTCAAAAACATTAGACTTAAATTGCAGCTTAAACTTTTGGGATCCATGA 1020 0.4333 MQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLDTSSDSKQEDYIETKSSDGHCSREISLGAQNQITENMEIAQALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSAPVGIELTKAELSQLVTIINNACPSSPTSELTETRGLSLSCGDRKRDRGTMCSLESSLTSSESSGRKEEKQSMEEIEEFKSSNNASHELPLMGIHTENKASNGGSSSEASGRKRSAATKSNDGRCFVEQPCGKRGGNKLRKPEMLDLNSQCQSDMDSTTSKTLDLNCSLNFWDP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01619 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
Phco4g01619 339 FunFam Myb family transcription factor 14 72 - -
Phco4g01619 339 Pfam Myb-like DNA-binding domain 17 68 IPR001005 -
Phco4g01619 339 Gene3D - 14 72 - -
Phco4g01619 339 Pfam MYB-CC type transfactor, LHEQLE motif 112 158 IPR025756 -
Phco4g01619 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 261 IPR044848 GO:0003700
Phco4g01619 339 MobiDBLite consensus disorder prediction 227 247 - -
Phco4g01619 339 Coils Coil 115 135 - -
Phco4g01619 339 MobiDBLite consensus disorder prediction 263 281 - -
Phco4g01619 339 MobiDBLite consensus disorder prediction 188 207 - -
Phco4g01619 339 MobiDBLite consensus disorder prediction 214 308 - -
Phco4g01619 339 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Phco4g01619 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677
Phco4g01619 339 MobiDBLite consensus disorder prediction 71 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01619 Phco-Chr4 15871921 15873628 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco4g01619 Myb_DNA-binding 1.1e-06 CL0123