Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01618 ATGTCTGGGGCTGTTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACCATTTCTCTGTCACGCCACAACCAGGTTTCTGCTAATGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCACCATCACAGTCCTCCTTCATCTTCGTCTTTTCCACGTGAAGTGATGTCCACAACGGAACATGAACCTGAGAGGGATAAGGAACCATCAGGGAAAGAACTCACCTCAACACAAGATGACGAAGCCTTACATGAAGAACTAAAATCTCCAACATCTTCATGCAATCTCGAGAACCCCAAGACCCCCTCAACTGAAATAGAAACTTCCTTAATGAAATCACCTAAAAAGGGAGACCAAACTGACACGACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAGATACTTCCATGCCCTCGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCGCGCCATTTCTGCAAGCACTGCCAGAGATACTGGACTGCAGGAGGAACCATGAGGAATGTGCCAGTTGGTGCAGGTCGCCGCAAGAACAAAAACACTTCTTCTGCTGCATCACATTATCGTCAAATCGTGGTTCCTGAGACCCTTCAGAACGGATCTTTGCACAGTGCTGTGTTGACCTTTGGATCAGATTTCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACACAAAATGGTGTTCTCAATGGGTTTCATTCACCTAAGCATAATGTTAGCACTGTTAATAATAATAACAGTGGGGATGATATTAACTCAGTTGGTGCTTCTGTTATGGCTTCAACTTTGTCTGAGAAGAGAGACAATGCTACTAGCTCTCATGATGAATCAGTGGATAAGATTTATCATCAAGGTTTCAGTCCTCAATTGTGTCTCCCAGGTTCTTCATCGTCTTCTTCTCCTTGGCCTTATCCGTGGAACCCTGCAGTGATTCCTTCTGCTTTTTACCAACCTGTGTCATTCTACCCCACACAAGCATTTTGGGGATGCATGCCACCACCATCTTGGAGTATAAATTACCAATCTGCCCCTAGTTCTGGTCCAAACTCACCAACCTTGGGGAAACATTCAAGAGATGGAGACATCTTGTTCCAAAAGCCTGGCACAGAAAGCAGCAGCAGCAACATGGCAGAAAATAGCAACACTGTGTTGATCCCCAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCTATATGGTCAACACTAGGGATCAAGAATGAGAAGGGGAACTCTCTGAATGGAGGAGGGCTTTTCAAGGCATTTGCATCAAAGGGAGGTAGTGATGACAAGAACCATGTGGTGGTTGAAGCATCCCCAGTGTTGCAAGCTAACCCCGCAGCTTTGTCAAGGTCTCTTGTGTTCCATGAGAGGACATAG 1443 0.456 MSGAVKDSAIKLFGRTISLSRHNQVSANGSSSEPAPPQDYSHHHSPPSSSSFPREVMSTTEHEPERDKEPSGKELTSTQDDEALHEELKSPTSSCNLENPKTPSTEIETSLMKSPKKGDQTDTTSASEDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNTSSAASHYRQIVVPETLQNGSLHSAVLTFGSDFPLCDSMASVLSLAEKTQNGVLNGFHSPKHNVSTVNNNNSGDDINSVGASVMASTLSEKRDNATSSHDESVDKIYHQGFSPQLCLPGSSSSSSPWPYPWNPAVIPSAFYQPVSFYPTQAFWGCMPPPSWSINYQSAPSSGPNSPTLGKHSRDGDILFQKPGTESSSSNMAENSNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGGSDDKNHVVVEASPVLQANPAALSRSLVFHERT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01618 480 MobiDBLite consensus disorder prediction 89 121 - -
Phco4g01618 480 PANTHER CYCLIC DOF FACTOR 2 1 480 IPR045174 GO:0003700|GO:0006355
Phco4g01618 480 MobiDBLite consensus disorder prediction 122 137 - -
Phco4g01618 480 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Phco4g01618 480 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Phco4g01618 480 MobiDBLite consensus disorder prediction 19 57 - -
Phco4g01618 480 MobiDBLite consensus disorder prediction 19 137 - -
Phco4g01618 480 MobiDBLite consensus disorder prediction 58 88 - -
Phco4g01618 480 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01618 Phco-Chr4 15799446 15802420 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco4g01618 zf-Dof 5.6e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01618 4 15799446 15802420 Phco8g01347 8 14042849 14045541 PCT