Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01616 ATGGCCAGCAGCAAGTGTTGCATGATCTCTTCACAACAAAACCAGAATGCCCCCACATGTTGCCCTTTTCCATCTCCTCCTTCAATGGGAATGGTCTATGCAGACATGATGGGATCTCTCTCTCTTTCTACTGTTTCAAATGCTCTTTCATCTCAAGAGAGCTATGGTTATGGTCATATTCATGATCATGGTCATGCTTCTGGGGTGGAAAATGGGAGGAGCACAAGCTGGAGTTTTCCTTTCATGAGGGAGTTCCTTTCCTCAAACTTTGAAGACTGTAGTGATGTTGGGGCTGGGGAGAGTAACAGCAATGACAAAACAACCAACAATGGCAAGTTTAGTGAAGAAAGTAACCCTAACGAGAACCCTCTCAGTGGCAAAGAGGTAGATAGTGGACACTCTAAACTGTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGTTGTAGACTGAGGTGGTTCAACCAGTTAGATCCAAGGATCAATAGAAGAGCTTTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCCCATAGAATTTATGGCAACAAATGGGCTATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCGAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGAGCCAATCTGTTTACAAAAGGGTGGAGCAAAATCCAACCTTTGTTTGCAGCAGGGATAGTGCCTCAACCGCGGAACAGGAGCCAACGCCTTCATATTGTCTCCATCTCCTCCAAAATGAAGTAGGAGTTACAAATAACGTGTCTAGTTTCCCATCCTTCCATGGAGTAGGTGCTGGGGAGATTGTTGAGTTTGGCTCAAACGGTTCTCCACAAAACATGACTGGTGGGAGCGAAACAATGTCAAACACCCCACAACTTGGCCTGTGTGCTCAACCTCAACAAGCACCATTTGATTTCTTCTCCGGTGGTGGAAGCAAAGACATGATGGGAGATGCTAATGGCCAGATCAGATGCTGGGAAAGGACCAATGAATCTCTTCACCATCATTGCCAACAATCTGGTTTATACCCTCATTATCCCCAACAATATTTGATGGCAATGCAACAGCTAGACAACAACACATGCAACAATTTTTACAGTTTCTTGAATTCCTCATCGGCATCAACAACCACAGGCAATGAACCATCATCATCACCATGTGTTGCAGGAATCAGAGATAAAGTGGTGAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1389 0.4564 MASSKCCMISSQQNQNAPTCCPFPSPPSMGMVYADMMGSLSLSTVSNALSSQESYGYGHIHDHGHASGVENGRSTSWSFPFMREFLSSNFEDCSDVGAGESNSNDKTTNNGKFSEESNPNENPLSGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVYKRVEQNPTFVCSRDSASTAEQEPTPSYCLHLLQNEVGVTNNVSSFPSFHGVGAGEIVEFGSNGSPQNMTGGSETMSNTPQLGLCAQPQQAPFDFFSGGGSKDMMGDANGQIRCWERTNESLHHHCQQSGLYPHYPQQYLMAMQQLDNNTCNNFYSFLNSSSASTTTGNEPSSSPCVAGIRDKVVNSDPPDGVPPPFFDFLGVGAT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01616 462 CDD SANT 193 233 IPR001005 -
Phco4g01616 462 Gene3D - 139 190 - -
Phco4g01616 462 PANTHER MYB PROTEIN-RELATED 139 281 - -
Phco4g01616 462 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Phco4g01616 462 Gene3D - 192 263 - -
Phco4g01616 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 185 IPR017930 -
Phco4g01616 462 FunFam MYB transcription factor 139 190 - -
Phco4g01616 462 FunFam MYB transcription factor 192 262 - -
Phco4g01616 462 SMART sant 190 238 IPR001005 -
Phco4g01616 462 SMART sant 138 187 IPR001005 -
Phco4g01616 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Phco4g01616 462 MobiDBLite consensus disorder prediction 96 127 - -
Phco4g01616 462 SUPERFAMILY Homeodomain-like 139 232 IPR009057 -
Phco4g01616 462 ProSiteProfiles Myb-like domain profile. 139 185 IPR001005 -
Phco4g01616 462 MobiDBLite consensus disorder prediction 96 132 - -
Phco4g01616 462 CDD SANT 142 183 IPR001005 -
Phco4g01616 462 Pfam Myb-like DNA-binding domain 139 185 IPR001005 -
Phco4g01616 462 Pfam Myb-like DNA-binding domain 191 234 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01616 Phco-Chr4 15751769 15753633 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g01616 Myb_DNA-binding 2.1e-14 CL0123