Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01594 ATGGAAGACAAGGGCAGAGCAAGCTCCGATCCCGCCGCGGTTGAGTTCGCCGGCGACACAAGTTGGACATTCGCCGCCGATGGGTCCGACGCCGCCTACTTGTTCTCCGGAGACACAGAGCGAAGCATACTCAGGGAATTCGGGTGGAACCTCGAAACGGACCAGCCGAACCGGATCGGCACCGACGACGGATTGTGGATGCCGGTTCAATCCTCTCTGACCGGTTCGATTGAACCTGCCGCTGCTGCATCGTCGCGGTCGAATAACCAGTCGGTGTCGTCGAGCTCCAGCGAGGATCAGCCGGAGAAATCCACCGTCTCTGACGAGAAACCGCCTGAGATACCGAGTAAAGGTAAAAAGAAGGGGCAAAAGCGATTAAGGCAGCCACGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGCCCATTCCCTAGGAGCTACTACCGCTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGAACGCTCTTCCGAGGACCCAACGATTGTGATTACCACATATGAAGGCCAGCACTGTCATCATACCGTTGGATTTCCTCGAGGGGGAATCATCAGTCACGAGGCTGCTGCCTTTGCGGGCCAGTTTGCTCCTACAATTTCACAGTTTTATTATCCAATTCATTCACCAAGAGAGACTAATAATATAAATACTCTCAGCTCCATTTCTCAGCCATGCCAAGCACAGGATGATGCATCTGGAGGATCCAGCGCAGTAATGCCAGCTGATGCATCGTCGCTGCCGCCTCCCACGGATGAAGGGTTGCTTGGAGATATTGTACCTCTGGGAATGCGTATCAGATGA 879 0.5267 MEDKGRASSDPAAVEFAGDTSWTFAADGSDAAYLFSGDTERSILREFGWNLETDQPNRIGTDDGLWMPVQSSLTGSIEPAAAASSRSNNQSVSSSSSEDQPEKSTVSDEKPPEIPSKGKKKGQKRLRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIISHEAAAFAGQFAPTISQFYYPIHSPRETNNINTLSSISQPCQAQDDASGGSSAVMPADASSLPPPTDEGLLGDIVPLGMRIR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01594 292 FunFam WRKY transcription factor 57 128 202 - -
Phco4g01594 292 Gene3D WRKY domain 129 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g01594 292 MobiDBLite consensus disorder prediction 102 119 - -
Phco4g01594 292 ProSiteProfiles WRKY domain profile. 137 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g01594 292 SMART WRKY_cls 142 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g01594 292 SUPERFAMILY WRKY DNA-binding domain 134 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g01594 292 MobiDBLite consensus disorder prediction 77 101 - -
Phco4g01594 292 Pfam WRKY DNA -binding domain 143 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g01594 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 239 IPR044810 GO:0003700
Phco4g01594 292 MobiDBLite consensus disorder prediction 77 132 - -
Phco4g01594 292 MobiDBLite consensus disorder prediction 250 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01594 Phco-Chr4 15192586 15195738 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco4g01594 WRKY 1.8e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02119 8 22634358 22636127 Phco4g01594 4 15192586 15195738 PCT