Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01578 ATGTGGAGGAGACCTCGGCGTGTTGCACTTCTCTCTCCCCTTAAAATTCCTAGGCTGCAAAGGCTAGGGAAGAAGCAAGAGGAAGAAGGAGATTGTAATGAGTTCAATGTTCCAAGGCCTTACCTTTCTGAAGCATGGGAGGTTCAGGAATATGGTAGGAGAAAAATAGAGAACCCCTTGGTGCAAGCTTTTGCGGAAGGTGCCTTTCATAAAACCCCATTTCTTTTCTCTCTACAAAGCTCCGACTTTTTTCCTTCTGGCTTGCAACATTTTCGGCTTAGAGAGATCTCAACATCTCCCTACCATGGCAAGCAAGTGGAAGAATGCCAGTTGGCCCGCCTGACGCACTTCAAGGAAATTCAATGGTTGGGGCAGAGTTTCGCATTAAGAAATTTCAAAGAGAGAGAGAAGCGCAACAGGCTGAGGGATTTGAATTCCCTCCTCCTACATTATGCTCTATTTGGATTGAGGTGGGGATTTGTGGGGTGGGGTGGGGAGGGGAGGGGAGGGAGTGGATTAGAGAGGATATGTGAGGGAGTGGAACCCAGTTTCCCCAAATCCAGATCTCATTTGCTTTCCATTCATGACTCATCAATGTCTTCTTCCTCAATCTTCTTCATTTTCCTCTCCCTCTCCCTCCTCTTCAAACCCTCAAACACTCAGACATGCTCTTCCAACTCTAACACAAACAAAAACACATACACTCACCACTGTCCTCCCTTTTCCTCCAATCCCCCTTTCCCTTTCTCCTCCACACCAGGCTGTGGCCACCCATCCTTCCACCTAACCTGCTCCACCCCCCATTCTTTCATCTCCATCAACAACCTCTCCTTCTCCATACTCTCTTACAACTCCAACACCTCCTCCATAACCCTCTCCCCTCACCCTCACCTTCACCCTCACCCAACCTCTTATCCCAACTGCCCCTCCTTCCCCTCCATTCCAACCCGCCCCATCAACCTCTCTGCCACCCCCTTTCGCGTCTCAGCGGCCACATGCTCCCGCCTCTCCCTCCTCCGCCCCTGCTCCCCGCCTTCCCTCCCCAACTGCTCCCACTGCCCCTCCCAATGCCACCTCATCAAAACCCCCTCCCACCTCCTCCCTGACTGTAGATCCACCCACCACTCCCCTCAGTACTCAGACCCCCCCTGCCAGACCGACATCCTTGGCTTCCTCCAACAGTTACTCCAAACCGGAATCCAACTGGACTGGGACCAAACCACTGATCCCTACTTCACCAACTGCACCCTCTGCCGCGCCAACAACGGCCTCTGCGGCTTCAACTCCTCCTTCAAGAACAACCCATTCCTCTGTTTCCGCTTCCGCTCCCAATCCACACTCTCCCCACCATGGATTCACAAATTCAAACCCAACAAAATGGCCCTTTTCAGCACCGTCATCGCCTTCACCTCCCTGCTTCTCCTAATTTCAGTTGCCACCGCCATCCTACGCTCCGCCAGGTCAAAGGCCTCCTCCGCCACGCAGCAAGATCCCACCACGCTCTTCCTCCACCACCACCGCTCCGCCAGCCTCCTTCCTCCGGTCTTCACCTACGACGACCTCGCCGCCGCCACCCACAACTTTGATCCCAAGCGGAAAATCGGCGACGGCGGGTTCGGCTCCGTCTACCTCGCGCAGCTCCGCGACGGTCGCCTCGCGGCGGTGAAGTACCTCCACCGCCACCACTCCTCCGCCGCGTTCTCTACCAAGTCCTTCTGCAACGAGATCCTCATCCTCTCCTCGATTCACCACGTGAACCTGGTGAAGCTCCACGGTTACTGCAGCGACCCGAGGGGACTTCTCCTCATCTACGAGTACATCCCCAACGGAACCCTGGCGGAGCATTTACACCACCGCAAAGGATCGCTGACGTGGCAAGTGAGGCTCGACATCGCGTTACAAACGGCGTTAGCAATGGAGTATCTTCACTTCTCGGTGGTTCCGCCGGTCGTCCACAGAGACATAACGTCGTCGAATATTTTCGTGGAAAGAGATATGAGGATCAAGGTGGGAGATTTCGGGTTGTCGCGGCTTTTGGTGGTGCAGGATACGACATCGTCTTCGAATGGGTTCGTTTGGACCGGCCCGCAAGGAACACCGGGCTATCTGGACCCAGATTACCACCGGTCGTTCCGGTTGACCGAGAAGAGTGACGTGTACAGTTTCGGAGTTGTGCTGTTGGAGCTTATCTCGGGAATGAAAGCGGTGGACCAGAGTAGAGACAAGCGCGAAATGGCGCTTGCTGATTTGGTTGTTTCCAGGATCCAGATGGGGCAGCTCCACCAAGTTCTGGATCCGGCTTTTAAACGCGGCGACAGTGACGGCGTGGCTGCAGTAGCGGAACTGGCGTTCCGATGCGTGGCGGCAGATAAGGACGACCGGCCGGACTCCAGGGAGGTGGTGGAGGAGCTGCGGCGGGTGCGGAGTCGGACGGTGGCGGCAAAGGAGTGA 2451 0.5532 MWRRPRRVALLSPLKIPRLQRLGKKQEEEGDCNEFNVPRPYLSEAWEVQEYGRRKIENPLVQAFAEGAFHKTPFLFSLQSSDFFPSGLQHFRLREISTSPYHGKQVEECQLARLTHFKEIQWLGQSFALRNFKEREKRNRLRDLNSLLLHYALFGLRWGFVGWGGEGRGGSGLERICEGVEPSFPKSRSHLLSIHDSSMSSSSIFFIFLSLSLLFKPSNTQTCSSNSNTNKNTYTHHCPPFSSNPPFPFSSTPGCGHPSFHLTCSTPHSFISINNLSFSILSYNSNTSSITLSPHPHLHPHPTSYPNCPSFPSIPTRPINLSATPFRVSAATCSRLSLLRPCSPPSLPNCSHCPSQCHLIKTPSHLLPDCRSTHHSPQYSDPPCQTDILGFLQQLLQTGIQLDWDQTTDPYFTNCTLCRANNGLCGFNSSFKNNPFLCFRFRSQSTLSPPWIHKFKPNKMALFSTVIAFTSLLLLISVATAILRSARSKASSATQQDPTTLFLHHHRSASLLPPVFTYDDLAAATHNFDPKRKIGDGGFGSVYLAQLRDGRLAAVKYLHRHHSSAAFSTKSFCNEILILSSIHHVNLVKLHGYCSDPRGLLLIYEYIPNGTLAEHLHHRKGSLTWQVRLDIALQTALAMEYLHFSVVPPVVHRDITSSNIFVERDMRIKVGDFGLSRLLVVQDTTSSSNGFVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGMKAVDQSRDKREMALADLVVSRIQMGQLHQVLDPAFKRGDSDGVAAVAELAFRCVAADKDDRPDSREVVEELRRVRSRTVAAKE 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01578 816 ProSitePatterns Tyrosine protein kinases specific active-site signature. 650 662 IPR008266 GO:0004672|GO:0006468
Phco4g01578 816 SUPERFAMILY Protein kinase-like (PK-like) 514 807 IPR011009 -
Phco4g01578 816 Gene3D Phosphorylase Kinase; domain 1 504 606 - -
Phco4g01578 816 FunFam LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 607 816 - -
Phco4g01578 816 FunFam Putative serine/threonine-protein kinase At1g18390 family 504 606 - -
Phco4g01578 816 Gene3D Transferase(Phosphotransferase) domain 1 607 815 - -
Phco4g01578 816 CDD STKc_IRAK 534 804 - -
Phco4g01578 816 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Phco4g01578 816 ProSiteProfiles Protein kinase domain profile. 528 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01578 816 Pfam Protein tyrosine and serine/threonine kinase 531 804 IPR001245 GO:0004672|GO:0006468
Phco4g01578 816 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 201 811 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01578 Phco-Chr4 14917087 14928957 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Phco4g01578 PK_Tyr_Ser-Thr 3.2e-43 CL0016