Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01558 ATGGATCCGGCAGCGATCATCAACGCCGCCGCCGCCAACACAACATCCTACAACCTCTCAGAGATCTGGCACTTCCCGCCTCCCAACGTGCCAGACGCCACTGCCGCACTGGGCCTCAGTAGGGCTCATTTCGGACACCGGCTTCCGGACTTCGGGCCTGCCCCGGCCCGAGACAGCGGCCCGGCTAGCATTGGCCCGAAGAAGAGGCTCGACGCCGAGCAGGAGGAATCGGCTAAGGGCGTCTTCACTAGCAATGGCGTGAACGAGGGTGGTGGTGGTGGTGATGGGAAACGGGTTAAGACAACAGGGAACCACAAGAGTGAGAGCGCCATAGGTGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTTCAGAGCCTCCTTCTAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGGGCTAGACGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCGTTGGTTCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAGGCCGTAAATTCAAGAATGCCCTCTGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCTGCAAACATTTGATACAACTGGCATCCCATTCGCTTCTCAACCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACATAG 807 0.5167 MDPAAIINAAAANTTSYNLSEIWHFPPPNVPDATAALGLSRAHFGHRLPDFGPAPARDSGPASIGPKKRLDAEQEESAKGVFTSNGVNEGGGGGDGKRVKTTGNHKSESAIGEGESSSGKLAEQGGKPPSEPPSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMPSGIEVFPPKDFDLQTFDTTGIPFASQPTREYSRGSSPEWLHMQVGSGFERAT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01558 268 SMART finulus 153 203 IPR011598 GO:0046983
Phco4g01558 268 CDD bHLH_AtBPE_like 137 222 - -
Phco4g01558 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 215 IPR036638 GO:0046983
Phco4g01558 268 MobiDBLite consensus disorder prediction 48 136 - -
Phco4g01558 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 72 238 IPR024097 GO:0006355
Phco4g01558 268 Coils Coil 194 214 - -
Phco4g01558 268 FunFam Basic helix-loop-helix transcription factor 144 217 - -
Phco4g01558 268 Gene3D - 144 218 IPR036638 GO:0046983
Phco4g01558 268 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Phco4g01558 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01558 Phco-Chr4 14650191 14653213 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g01558 HLH 2.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01558 4 14650191 14653213 Phco4g01558 4 14650191 14653213 ECH
Phco4g01558 4 14650191 14653213 Phco8g02626 8 38248483 38250241 PCT