Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01542 ATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGGTGCCTGCTCGAGGAGAAGCGTCTGGGCAACCGCAGATGGCAAATGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCGGGTGTCATTGCAAGAGTGAAGGAACTGTTTAAAGGCCATAGAGATCTTATATTAGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACACTTCCATCAGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGCGATGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTATAGAAAGGAAAACAAGTCTATTACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCACCCTGATCTTCTTGACGAGTTTACTCATTTTCTTCCAGATGCTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGTAATTCTATTCTTCGTGATAGGAGCTCAATGCCAACAGTACGCCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGTTTCACATGGGGATCATGACCCCAGTGGTGATCGTCCTGACCTAGATCACGACAGAGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGCGTGGAGAAGGAAAAGGAACGCAGAGAAGATAGAGACAAGAGAGAACGTGAAAAGGATGATAGAGATTATGAGCATGATAGGGAGCGATTTCCTCACAAACGGAATCGTAAGGTTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGTTATGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTAGCTTTTTGCGAAAAAGTCAAAGAAAAATTACGAAATCCAGATGACTACCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAGTATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTACAATCTGAAAAAAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGGTGAAGACAGGGAAAGAGAACGGGATCGAGATAGAGACCGATATAGGGATGATGGGATGAAAGAAAGGGACCGTGAGTTCCGTGAACGGGATAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGGCTCTATATCCCTGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGTACTCCTAGTTACCGGCTCTTACCAAAAAATTACCCAATACCCATAGCTAGCCAGAAAACAGAACTTGGTGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTGAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAATAATACAATTAAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATCGAAAGATTATATGGTGATCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAATGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGATACGAAAAGCCTGAGCACCAAAGCCTTGCTGGCAGAAATAAAAGAAATCAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAACAGATGGCCAATTCTACCAAACTTGGAGTTTAAGTATTCTGATCTAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCATGTGGTGAAATTTGCACAACTGAACACGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAGCCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTATCAAGACTAAGAATAATAATGTCAAGAATGGCACTGCAAGTGTTGCTGAAAGTGATGGTAGCCCTATTGTGGGTGCTACCATCATGAATCCAAAGCATAGAAATGTTTCCAGAAATGGGGATGGTTGTATGCCAGAGCCAGTAGACCAATCAACTTCTAGTAAAGCATGGCAATCAAATGGTGGTAGTGGGGTTAGAGAGGATAGGTATCTTGATGACCGTGCAATGCGTAAAACTGAAACTTTGGGAAGTAATTCACAGCATGGTAAAATGAATAATATTGCTTTCCCACCTAATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCCAGTGAAAGGTTAGTGAATGCAAATGTCTCACCCGCATCCGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCCACTCCAACTAGACCTGTTAATGCTTCTGCTGGGGGAGGACCTGATATACCACCTTTAGAGGGTGGTGATTCTGCAAGACTGGGTACATCCTCAAATGGGGCCATCACTGGAGGCACCAAAGTCCACCAATATCAAGAGGAATCAATTCGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACGTTGAAGAAGATAACTTTGAAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAACGAAAAGGATGGTGGTATGGGTCAGCAATATCAAGATAGACATGGGGATGATGTTTGTGGTGAAACCAGAGGAGAAAACGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGGGAAGAGCATGAGGATGGGGAACATGATCACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCTCATGACGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTCCTAACTGTGAATCCACTAGCAAAGTATGTTCCTCCAATGTTACATGAGAAGGACAGGAATTCAAGAGTTTTCTATGGAAATGATTCCTTTTATGTGCTTTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCGAAGATTAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACTGATCAATATGACAGATTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAGTTGGAATTCAGTCATATGTCTTATTCACATTGGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAGCTTCTACAACTATATGCATATGAGAAATCAAGAAAACCTGAAAAATTTGTCGACATAGTTTATCATGAAAATGCTCGAGTTCTTCTCCATGATGAGAACATATATCGCGTTGAATATTCACCTGGAGCAACGAAACTGTCTGTTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCTGTTTCAATGGACCCTAATTTTTCAACCTATCTACTCAATGACTTCCTGTCTGTCATCCCTGAAAAAAAAGAGAAGTCAGGGATTTTCTTGAAGAGGAACAAACGTAGATATGCTGGTAGTGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCGAAGGTCTCTTACGTCTTAGATACTGAAGACTTTTTGTATCGGGTGAGAAGGAAACGAAGAATCTTGCATCCAAAGAGTCCAGGCACCCATGAACAGGCACAGTCATCAAACATTCGTTCAAGAAGAGTACAACGATTCCGCAACTTGTTTTCCATTACATGA 4287 0.4077 MKRSRDEVFTSCSQLKRPVVPARGEASGQPQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSILRDRSSMPTVRPMHVEKRERTMVSHGDHDPSGDRPDLDHDRGLLRIEKERRRVEKEKERREDRDKREREKDDRDYEHDRERFPHKRNRKVEDSGAEPLLDADENFVMRPMSSTCDDKNSLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKGEDRERERDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMALYPCKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDIPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRWPILPNLEFKYSDLDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVIKTKNNNVKNGTASVAESDGSPIVGATIMNPKHRNVSRNGDGCMPEPVDQSTSSKAWQSNGGSGVREDRYLDDRAMRKTETLGSNSQHGKMNNIAFPPNELSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPVNASAGGGPDIPPLEGGDSARLGTSSNGAITGGTKVHQYQEESIRPFKSEREEGELSPNGDVEEDNFEVYGGNGLDAVHNEKDGGMGQQYQDRHGDDVCGETRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDHKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVNPLAKYVPPMLHEKDRNSRVFYGNDSFYVLFRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIVGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPEKFVDIVYHENARVLLHDENIYRVEYSPGATKLSVQLMDSGHDKPEVTAVSMDPNFSTYLLNDFLSVIPEKKEKSGIFLKRNKRRYAGSDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLYRVRRKRRILHPKSPGTHEQAQSSNIRSRRVQRFRNLFSIT 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01542 1428 MobiDBLite consensus disorder prediction 949 967 - -
Phco4g01542 1428 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Phco4g01542 1428 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Phco4g01542 1428 MobiDBLite consensus disorder prediction 422 454 - -
Phco4g01542 1428 Pfam Paired amphipathic helix repeat 351 395 IPR003822 GO:0006355
Phco4g01542 1428 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Phco4g01542 1428 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Phco4g01542 1428 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Phco4g01542 1428 MobiDBLite consensus disorder prediction 827 849 - -
Phco4g01542 1428 PANTHER SIN3B-RELATED 38 1284 IPR039774 GO:0003714
Phco4g01542 1428 FunFam Paired amphipathic helix protein SIN3 326 400 - -
Phco4g01542 1428 MobiDBLite consensus disorder prediction 1042 1056 - -
Phco4g01542 1428 SMART hdac_interact2seq4b 493 593 IPR013194 -
Phco4g01542 1428 MobiDBLite consensus disorder prediction 1015 1034 - -
Phco4g01542 1428 MobiDBLite consensus disorder prediction 420 454 - -
Phco4g01542 1428 Pfam Sin3 family co-repressor 496 587 IPR013194 -
Phco4g01542 1428 SUPERFAMILY PAH2 domain 327 395 IPR036600 GO:0006355
Phco4g01542 1428 Gene3D Paired amphipathic helix 327 399 IPR036600 GO:0006355
Phco4g01542 1428 ProSiteProfiles PAH domain profile. 329 398 IPR003822 GO:0006355
Phco4g01542 1428 MobiDBLite consensus disorder prediction 1069 1094 - -
Phco4g01542 1428 MobiDBLite consensus disorder prediction 827 842 - -
Phco4g01542 1428 Pfam C-terminal domain of Sin3a protein 1141 1387 IPR031693 -
Phco4g01542 1428 Coils Coil 252 275 - -
Phco4g01542 1428 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Phco4g01542 1428 MobiDBLite consensus disorder prediction 861 1094 - -
Phco4g01542 1428 MobiDBLite consensus disorder prediction 208 310 - -
Phco4g01542 1428 MobiDBLite consensus disorder prediction 970 985 - -
Phco4g01542 1428 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Phco4g01542 1428 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Phco4g01542 1428 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Phco4g01542 1428 MobiDBLite consensus disorder prediction 218 305 - -
Phco4g01542 1428 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Phco4g01542 1428 MobiDBLite consensus disorder prediction 861 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01542 Phco-Chr4 14395087 14406033 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco4g01542 Sin3a_C 1.3e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01542 4 14395087 14406033 Phco4g01542 4 14395087 14406033 ECH
Phco4g01542 4 14395087 14406033 Phco8g02813 8 41399323 41410467 PCT