Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01477 ATGCAAACGATAACATATAAGATAGAGCAGTCAAACATGCCATTTGGTTTGGTTTCAGCCTGGAACAAGCGCCGGAGAAGCAAATCTCAAGAGCAAACAGATCCCTGGGTTTACAAACCTGCACAGCTTTGGCAGCTTGAAGATCAGACACCACGACCTACAAAAAGGCTACATGGATCATCCGTTTTCACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAGAATCTGCTTGGAAAAGGAGGATTCGGCAAAGTCTACAGAGGCACATTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGTTGCCAGCAATTAAAGCAGCAGAGGGGGAACGTGAGTTCCGAGTCGAAGTTGACATCTTAAGCGGACTTGACAACCCAAATCTTGTTTCTTTGATAGGCTACTGTGCTGATGGAAAGCATAGATTCCTAGTATATGAATATATGCGTAATGGAAACCTGCAAGATCATTTGAATGGAATTGGGGAAAGAAACATGGATTGGCCTCGAAGACTCCAAGTTGCACTGGGAGCTGCAAAAGGGCTTGCTTATCTTCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGGGATTTTAAATCGACCAATATTCTCTTAGATGACAGCTTTGAAGCAAAGATATCTGATTTTGGTCTCGCCAAGTTAATGCCAGAAGGACAAGAGACACATGTGACTGCCAGAGTACTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATCGACTGGAAAACTCACGTTACAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTTTGGAGCTTTTGACTGGACGTCGAGCCGTAGATCTAAACCAAGGTCCCAATGATCAAAACCTTGTACTACAGGTGAGGAATATCCTGAATGACCGCAAGAAGCTTCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCCTACACCATTCAGTCTATAGTCATGTTTGCCAATCTGGCATCAAGATGTGTTCGACCGGAGAGTAATGAAAGACCATCAGTGGCAGAATGTGTAAAAGAACTCCTAACGATTATCTATACAAATTCAAAAGGCTTGGGTATGGTTATGCATACTTTGAGAATGATCTAG 1122 0.4251 MQTITYKIEQSNMPFGLVSAWNKRRRSKSQEQTDPWVYKPAQLWQLEDQTPRPTKRLHGSSVFTLKEMEEATCSFSDENLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKAAEGEREFRVEVDILSGLDNPNLVSLIGYCADGKHRFLVYEYMRNGNLQDHLNGIGERNMDWPRRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDDSFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRNILNDRKKLRKVIDPEMARNSYTIQSIVMFANLASRCVRPESNERPSVAECVKELLTIIYTNSKGLGMVMHTLRMI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01477 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Phco4g01477 373 FunFam receptor-like serine/threonine-protein kinase NCRK 154 364 - -
Phco4g01477 373 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Phco4g01477 373 CDD STKc_IRAK 81 352 - -
Phco4g01477 373 SUPERFAMILY Protein kinase-like (PK-like) 61 358 IPR011009 -
Phco4g01477 373 PANTHER OS01G0750732 PROTEIN 28 355 - -
Phco4g01477 373 Gene3D Transferase(Phosphotransferase) domain 1 154 364 - -
Phco4g01477 373 Gene3D Phosphorylase Kinase; domain 1 43 153 - -
Phco4g01477 373 ProSiteProfiles Protein kinase domain profile. 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01477 373 FunFam serine/threonine-protein kinase PBS1-like 43 153 - -
Phco4g01477 373 Pfam Protein kinase domain 76 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01477 Phco-Chr4 13336560 13341065 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Phco4g01477 Pkinase 6.7e-48 CL0016