Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01427 ATGACTCATTACCTTCTCTACGTGTCTTTGTGGAAACTTCCCCTCCCTTCCACAACGGAAGTTTTTTCTGCACTTTCATTTTCATCTAGGACAGAGAGAGGGCTTGGAGTGCTACACCTTCATCTCTCTATCTTCTTCTTTCTCTTCCTCTCTTATACACTCACAAATTCAGACAGATACACACCAATGTCAACACTCAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGTACCACTATATTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAACAAGATGCTAACAAGACTTTGAACAGCCACAGTGCGTCCCTGATGACCTTTTCTGATTGTGAGGAAGAGGATGTCATTCCAATGAGTAATATTGTGAATAAACCTCCAGAGAAGAGACAGCGAACGCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCTCACAAAGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAGAGCTGTATCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCTGAGGTCAATGAAGAAGATGGTCAAGGTTTCCGAGGAAGAAAGGTCCAAAGGAACTCCATCTTTGAAAGGACACCGTTTGAGTGA 840 0.4286 MTHYLLYVSLWKLPLPSTTEVFSALSFSSRTERGLGVLHLHLSIFFFLFLSYTLTNSDRYTPMSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQDANKTLNSHSASLMTFSDCEEEDVIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDDQESCIQTDQLVDLDSQVDPPDAEVNEEDGQGFRGRKVQRNSIFERTPFE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01427 279 PANTHER PROTEIN YABBY 6-RELATED 64 231 IPR006780 GO:0007275
Phco4g01427 279 MobiDBLite consensus disorder prediction 256 272 - -
Phco4g01427 279 SUPERFAMILY HMG-box 171 224 IPR036910 -
Phco4g01427 279 Pfam YABBY protein 73 225 IPR006780 GO:0007275
Phco4g01427 279 MobiDBLite consensus disorder prediction 244 279 - -
Phco4g01427 279 Gene3D High mobility group box domain 170 228 IPR036910 -
Phco4g01427 279 FunFam Axial regulator YABBY 4 170 237 - -
Phco4g01427 279 CDD HMG-box_SF 182 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01427 Phco-Chr4 12535970 12538389 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phco4g01427 YABBY 2.8e-62 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01427 4 12535970 12538389 Phco4g01427 4 12535970 12538389 ECH