Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01417 ATGGAACTTAGTAGTTTGGTTTTCTGGCTACTGGGGTTACTGCTTTTGCTGTTGATGGAGATTTCTTCTGCTGCTCTTTCTCCATCTGGCATAAACTATGAAGTTGTAGCTCTGATGGCCATAAAGGGTGCCTTGACTGATCCTCACAACGTTCTGGAAAATTGGGATTCTAGTTCTGTTGATCCATGTAGCTGGAGGATGATTACGTGTTCCCCTGATGGCTCCGTTTCTGCATTGGGTTTGCCGAGTCAGAACTTGTCTGGTACACTATCTCCATGGATTGGAAACCTTACTAACTTGCAATCTGTGTTGCTTCAGAATAATGGCATTTCTGGTAAGTTTCCTGCTGCAATAGGAAACTTGGAAAAGCTTCAGACACTTGATCTTTCCAATAATGCATTTAGTGGTGAGATTCCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGAGGTTAAACAATAACAGCCTTACAGGATCCTGCCCGCAGTCTCTTAGCAACATTGAAGGTCTAACCCTTGTGGACCTCTCCTACAACAATCTCAGTGGTTCCTTGCCTAGAATATCGGCAAGAACATTAAAGATTGTGGGTAACCCTTTAATTTGTGGTCCAAAAGCAAACAACTGTTCTTCTGTTTTACCAGAGCCACTTTCCTTCCCTCCAGATGCACTAAGAGGCCAATCAGACTCGGGTAAAAAAAGCCACCATGTGGCACTTGCTTTTGGTGCAAGCTTTGGTGCTGCATTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGAGATATAGACGCAACCAGCAGATATTCTTTGATGTTAATGAACATTATGATCCGGAGGTGCGTCTTGGTCATCTAAAAAGGTTTTCATTCAAAGAGCTTCGAACTGCAACAGACCATTTCAACTCGAAGAACATTCTTGGAAGAGGTGGTTTTGGAATAGTTTACAAGGCGTGCTTGAATGATGGGTCTGTTGTGGCTGTTAAGAGGTTAAAGGACTACAATGCAGCCGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACAATCAGTTTGGCTGTCCACCGGAATCTTCTCAGGCTTTCGGGATTTTGCAGCACTCAGCATGAAAGGCTCCTCGTTTATCCCTATATGTCTAATGGAAGTGTCGCCTCTAGATTAAAAGATCATATCCATGGCCATCCAGCGTTAGATTGGACTAGGCGGAAGAGAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTACTTGCATGAACAATGTGACCCTAAAATTATTCACCGTGATGTGAAAGCAGCTAACATCTTGCTTGATGAAGACTTTGAAGCTGTTGTTGGTGATTTTGGTTTAGCTAAGCTTCTGGATCATAGAGACTCCCATGTGACCACTGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTATCTATCCACTGGCCAATCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAACTGATCACAGGTCACAAGGCTCTAGATTTTGGGCGAGCAGCGAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAGTCAAATGGTAGACAAAGATCTAAAGGGAAACTTTGATCTGATTGAGTTAGAAGAAATGGTTCAGGTTGCACTCTTGTGCACACAATTCAATCCTTCACACCGCCCCAAGATGTCAGAAGTATTAAAGATGTTAGAAGGGGATGGTTTGGCTGAGAGATGGGAGGCCTCACAGAGGATTGAAACACCGAGGTTTCGGTCTTGTGAGCCTCAAAGATACTCAGATTTAATAGAGGAATCTTCACTCATAGTTGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1872 0.4364 MELSSLVFWLLGLLLLLLMEISSAALSPSGINYEVVALMAIKGALTDPHNVLENWDSSSVDPCSWRMITCSPDGSVSALGLPSQNLSGTLSPWIGNLTNLQSVLLQNNGISGKFPAAIGNLEKLQTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLTGSCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKANNCSSVLPEPLSFPPDALRGQSDSGKKSHHVALAFGASFGAAFVIVIIVGFLVWWRYRRNQQIFFDVNEHYDPEVRLGHLKRFSFKELRTATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQHERLLVYPYMSNGSVASRLKDHIHGHPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCEPQRYSDLIEESSLIVEAMELSGPR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01417 623 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Phco4g01417 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Phco4g01417 623 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Phco4g01417 623 SUPERFAMILY L domain-like 32 201 - -
Phco4g01417 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 586 - -
Phco4g01417 623 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
Phco4g01417 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Phco4g01417 623 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01417 623 ProSiteProfiles Protein kinase domain profile. 302 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01417 623 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Phco4g01417 623 FunFam Somatic embryogenesis receptor-like kinase 1 379 595 - -
Phco4g01417 623 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01417 623 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Phco4g01417 623 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Phco4g01417 623 SUPERFAMILY Protein kinase-like (PK-like) 278 576 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01417 Phco-Chr4 12404479 12409416 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco4g01417 Pkinase 2e-44 CL0016